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BioLiP
>protein
MSICPHIQQVFQNEKSKDGVLKTCNAARYILNHSVPKEKFLNTMKCGTCHEINSGATFMCLQCGFCGCWNHSHFLSHSKQ
IGHIFGINSNNGLLFCFKCEDYIGNIDLINDAILAKYWDDVCTKTMVPSMERRDGLSGLINMGSTCFMSSILQCLIHNPY
FIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALRQTGFIYLLTCAWKIQDAHEFWQFIINQIHQSYVLDLPNAKE
VSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFNYHCGECNST
QDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTVPDIIYELIGIVSHKGTVNEGHYIAFCK
ISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQVN

The query sequence (length=438) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3mhs:A 455 461 0.9840 0.9473 0.9349 0.0 6aqr:A, 4fip:A, 4fip:E, 4fjc:A, 4fk5:A, 6t9l:K, 4w4u:A, 4wa6:A, 4zux:U, 4zux:Z, 4zux:e, 4zux:j
2 4fjc:E 434 450 0.9612 0.9700 0.9356 0.0 3m99:A, 3mhh:A
3 4wa6:D 415 441 0.9384 0.9904 0.9320 0.0 4w4u:D
4 8bs3:A 324 310 0.2215 0.2994 0.3129 4.57e-42 8bs9:A, 8bs9:C
5 5k16:B 328 323 0.2352 0.3140 0.3189 1.41e-36 5cvm:A, 5k16:A, 5k1c:A, 5l8h:A, 5l8w:A
6 7r2g:B 351 336 0.2352 0.2934 0.3065 2.02e-36 6cpm:C, 6cpm:D, 6crn:A, 6crn:B, 6crn:C, 6crn:D, 6gh9:A, 6gha:A, 6ml1:A, 6ml1:B, 7r2g:A
7 2y6e:B 339 337 0.2306 0.2979 0.2997 5.27e-36 2y6e:A, 2y6e:C, 2y6e:E, 2y6e:F
8 2hd5:A 315 327 0.2374 0.3302 0.3180 1.95e-35
9 5cvn:B 321 328 0.2260 0.3084 0.3018 2.33e-33 5cvo:B, 5cvo:E, 6jlq:A
10 3nhe:A 338 346 0.2420 0.3136 0.3064 4.32e-33 6dgf:A, 2ibi:A, 3v6c:A, 3v6e:A, 5xu8:A, 5xve:A
11 3n3k:A 355 341 0.2352 0.2901 0.3021 1.02e-32 2gfo:A, 8xpn:A, 8xpn:B
12 2y5b:E 325 336 0.2260 0.3046 0.2946 5.60e-32 3i3t:A, 3i3t:C, 3i3t:E, 3i3t:G, 3mtn:A, 3mtn:C, 2y5b:A
13 5wch:A 350 313 0.2032 0.2543 0.2843 1.51e-29 5wch:B, 5wch:C, 5wch:D
14 5k1b:A 264 312 0.2237 0.3712 0.3141 2.31e-29
15 5ohk:A 304 316 0.2055 0.2961 0.2848 1.34e-26 5ohn:A, 5ohn:C
16 8xpn:C 327 335 0.2306 0.3089 0.3015 7.03e-26
17 5k1a:A 239 303 0.2055 0.3766 0.2970 1.06e-23 5k1a:C, 5k1a:E, 5k1a:G
18 8itn:A 350 330 0.2032 0.2543 0.2697 1.68e-23 8itn:C, 8itp:D, 8itp:B
19 5gvi:A 326 339 0.2009 0.2699 0.2596 1.85e-22
20 8d1t:A 330 339 0.2055 0.2727 0.2655 6.41e-22 8d0a:A, 5ohp:A
21 5n9t:A 357 297 0.1941 0.2381 0.2862 7.52e-22 8d4z:A, 8d4z:B, 6f5h:A, 6f5h:B, 6m1k:A, 6m1k:B, 5n9r:A, 5n9r:B, 5n9t:B, 5nge:A, 5ngf:A, 5ngf:B, 5uqv:A, 5uqv:B, 5uqx:A, 5uqx:B, 6vn2:A, 6vn2:B, 6vn3:A, 6vn3:B, 6vn4:A, 6vn4:B, 6vn5:A, 6vn5:B, 6vn6:A, 6vn6:B, 5vs6:A, 5vs6:B, 5vsb:A, 5vsb:B, 5vsk:A, 5whc:A, 5whc:B, 7xhh:A, 7xhh:B, 7xhk:B
22 7w3u:A 343 305 0.1598 0.2041 0.2295 9.19e-17 7w3r:A, 7w3u:B, 7w3u:C
23 5cht:A 308 317 0.1918 0.2727 0.2650 2.76e-16 5cht:B, 5chv:A, 5chv:B
24 8p14:A 331 308 0.1826 0.2417 0.2597 5.14e-15 8hje:A, 7tuo:A
25 8a9k:D 285 311 0.1849 0.2842 0.2605 6.05e-14 7ay0:D, 7zh4:D
26 5nge:B 313 319 0.1804 0.2524 0.2476 1.18e-13 5vsk:B
27 5txk:A 317 328 0.1986 0.2744 0.2652 3.12e-13
28 9fcj:D 312 323 0.1781 0.2500 0.2415 7.51e-13 7ay0:B, 9fci:D
29 7ay1:D 341 345 0.1895 0.2434 0.2406 4.37e-12 8a9j:D, 7ay2:B, 7zh3:D
30 3ihp:B 681 371 0.1735 0.1116 0.2049 2.90e-10 6dxh:A, 6dxt:A, 6dxt:B, 2g43:A, 2g43:B, 2g45:A, 2g45:D, 3ihp:A, 7ms5:A, 7ms5:B, 7ms6:A, 7ms7:A, 7ms7:B, 6nft:A, 6nft:B, 6p9g:A
31 6iil:A 341 155 0.0936 0.1202 0.2645 2.67e-07 6iik:A, 6iik:B, 6iil:B, 6iim:A, 6iim:B, 6iin:A, 6iin:B
32 6iil:A 341 22 0.0228 0.0293 0.4545 3.1 6iik:A, 6iik:B, 6iil:B, 6iim:A, 6iim:B, 6iin:A, 6iin:B
33 6h4h:A 458 264 0.1438 0.1376 0.2386 4.58e-07 6h4h:B, 8p1p:A
34 6h4h:A 458 59 0.0479 0.0459 0.3559 0.006 6h4h:B, 8p1p:A
35 8y6o:U 458 447 0.2032 0.1943 0.1991 2.84e-05 8h6e:4T, 8h6j:4T, 6qw6:U, 6qx9:U
36 8p1q:A 439 260 0.1393 0.1390 0.2346 3.33e-05 8p1p:B, 8p1q:B
37 8p1q:A 439 59 0.0479 0.0478 0.3559 0.004 8p1p:B, 8p1q:B
38 3c5k:A 108 93 0.0548 0.2222 0.2581 0.046 5b8d:A, 6ce6:A, 6ce8:A, 6cea:A, 6cec:A, 6ced:A, 6cee:A, 6cef:A, 8g43:A, 8g44:A, 8g45:A, 3gv4:A, 5kh3:A, 5kh7:A, 5kh9:A, 3phd:A, 3phd:B, 3phd:C, 3phd:D, 5wbn:A, 5wpb:A, 7zyu:A
39 5g0f:A 110 60 0.0388 0.1545 0.2833 0.068
40 7ay2:E 203 159 0.0822 0.1773 0.2264 0.84
41 1v7v:A 779 153 0.0868 0.0488 0.2484 2.0 1v7w:A, 1v7x:A
42 8c61:J 330 154 0.0890 0.1182 0.2532 2.9 8c61:A, 8c61:D, 8c61:G
43 4q8g:B 353 53 0.0411 0.0510 0.3396 6.4 4q8g:A
44 6r9j:A 595 53 0.0411 0.0303 0.3396 7.3 6r9o:A
45 6l7c:A 253 92 0.0457 0.0791 0.2174 7.4 6l7c:B, 6l7c:C, 6l7c:D, 6l7c:E, 6l7c:F, 6l7c:G, 6l7c:H, 6l7c:I
46 5xsi:A 333 46 0.0320 0.0420 0.3043 8.9 5xsi:B, 5xsn:A, 5xsn:B, 5xsp:A, 5xsp:B, 5xt3:A, 5xt3:B
47 2i50:A 122 54 0.0320 0.1148 0.2593 9.5
48 7suk:LP 359 118 0.0616 0.0752 0.2288 9.6 5wlc:LP
49 6r5k:A 1040 53 0.0411 0.0173 0.3396 9.9 4q8h:A, 6r9m:A, 6r9p:A, 6r9q:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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