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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQP
SLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMN
KGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSK

The query sequence (length=200) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2xri:A 206 200 0.9950 0.9660 0.9950 8.88e-150 7k05:A, 7k05:B, 7k06:A, 7k06:B, 7k07:A, 7k07:B, 7lpy:A, 7lpy:B, 7lpz:A, 7lpz:B, 7lq0:A, 7lq0:B
2 1zbu:B 304 186 0.3850 0.2533 0.4140 2.01e-38 4l8r:B, 4l8r:E, 4qoz:B, 4qoz:E, 1w0h:A, 1zbh:A, 1zbh:D, 1zbh:B, 1zbh:C, 1zbu:A, 1zbu:C, 1zbu:D
3 7n8w:A 214 209 0.3800 0.3551 0.3636 1.51e-33 7n8w:B
4 3cg7:A 296 194 0.3100 0.2095 0.3196 3.31e-21 3cg7:B, 3cm5:A, 3cm5:B, 3cm6:A, 3cm6:B, 5dk5:A, 5dk5:B
5 3rpc:A 262 93 0.1400 0.1069 0.3011 0.20 3rpc:B, 3rpc:C, 3rpc:D
6 4pne:B 272 57 0.0900 0.0662 0.3158 0.47 4pne:A
7 4r43:A 601 29 0.0750 0.0250 0.5172 1.1 5i67:A, 4rcg:A, 4wie:A, 4wiu:A, 4wl8:A, 4wou:A, 4wpt:A, 4wpu:A, 4wpv:A
8 6sc2:B 3930 59 0.0800 0.0041 0.2712 2.1 6rla:A, 6rla:B, 6sc2:A
9 4rh7:A 3005 59 0.0800 0.0053 0.2712 2.2
10 7e1n:A 210 31 0.0600 0.0571 0.3871 3.3 7e1n:B
11 7v55:A 781 65 0.0950 0.0243 0.2923 5.0
12 3ug4:C 484 67 0.0900 0.0372 0.2687 5.8 3ug4:A, 3ug4:B, 3ug4:D, 3ug4:E, 3ug4:F, 3ug5:A, 3ug5:B, 3ug5:C, 3ug5:D, 3ug5:E, 3ug5:F
13 6nt2:A 330 31 0.0550 0.0333 0.3548 7.4 6nt2:D, 6nt2:B, 6nt2:C, 1or8:A, 1orh:A, 1ori:A, 3q7e:A
14 8yeo:A 255 44 0.0750 0.0588 0.3409 7.5 8w1p:H, 8ydb:A, 8yh9:A
15 3lli:A 251 59 0.0650 0.0518 0.2203 7.7 3llk:A, 3llk:B, 3llk:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218