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BioLiP
>protein
MRVFTKEELSRYNGKEGAPAYVAYNGKVYDVTGSFHWKGGKHHVLHDAGQDLTESIGRAPHTAELLEKFPVVGVLR

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6nzx:A 76 76 1.0000 1.0000 1.0000 6.25e-53
2 6vz6:A 77 76 0.5395 0.5325 0.5395 5.25e-25
3 3ozz:B 82 79 0.3421 0.3171 0.3291 8.87e-05
4 1x3x:A 82 61 0.2632 0.2439 0.3279 2.10e-04 1x3x:B
5 1awp:A 86 67 0.2895 0.2558 0.3284 0.002 1awp:B, 1b5m:A, 1eue:A, 1eue:B, 4hil:A, 4hil:B, 1icc:C, 3mus:A
6 2ibj:A 86 75 0.2632 0.2326 0.2667 0.014
7 4x8y:A 112 56 0.2632 0.1786 0.3571 0.014 4x8y:B
8 2i89:A 90 67 0.2763 0.2333 0.3134 0.029 2i89:B, 2i89:C, 2i89:D, 1icc:A, 1icc:B, 1icc:D, 1lj0:A, 1lj0:B, 1lj0:C, 1lj0:D, 3mus:B
9 2r61:A 195 24 0.1579 0.0615 0.5000 0.73 2z8l:A
10 7usl:A 856 26 0.1316 0.0117 0.3846 1.1 7usm:A
11 7p2d:A 751 26 0.1316 0.0133 0.3846 1.2 7akk:D, 7akk:H, 1bho:1, 1bho:2, 1ido:A, 1jlm:A, 1m1u:A, 3q3g:G, 3q3g:E, 3q3g:I, 3q3g:L, 3qa3:G, 3qa3:E, 3qa3:I, 3qa3:L, 6rhw:C, 8voi:A, 4xw2:A
12 1cxy:A 81 83 0.3158 0.2963 0.2892 1.3
13 7caf:E 443 44 0.1974 0.0339 0.3409 2.2 8hpl:E, 8hpm:E, 8hpn:E, 8hpr:E
14 7yed:H 1288 20 0.1184 0.0070 0.4500 2.2 7yed:I, 7yed:J, 7yed:K, 7yed:L, 7yev:H, 7yev:I, 7yev:J, 7yev:K, 7yev:L, 7yez:H, 7yez:I, 7yez:J, 7yez:K, 7yez:L
15 7ly7:B 329 36 0.1711 0.0395 0.3611 2.6 7ly4:A, 7ly4:D, 7ly5:B, 7ly6:A
16 7qep:N2 93 64 0.2500 0.2043 0.2969 3.2
17 3k6s:C 885 27 0.1447 0.0124 0.4074 3.6 5es4:C, 5es4:E, 5es4:G, 3k6s:E, 3k6s:G, 3k71:A, 3k71:C, 3k71:E, 3k72:A, 3k72:C
18 4nen:A 1063 27 0.1447 0.0103 0.4074 3.6
19 4neh:A 1084 27 0.1447 0.0101 0.4074 3.6 5es4:A, 3k6s:A, 3k71:G
20 5d4w:A 688 25 0.1447 0.0160 0.4400 4.6 5d4w:B, 5d4w:C, 5zui:A
21 8ghf:A 910 25 0.1447 0.0121 0.4400 5.1 8ghf:B, 8ghf:C, 8ghf:D, 3mt5:A, 8s3e:A, 8s3e:B, 8s3e:C, 8s3e:D, 3u6n:A, 3u6n:B, 3u6n:C, 3u6n:D, 3u6n:E, 3u6n:F, 3u6n:G, 3u6n:H, 6v22:A, 6v22:B, 6v22:C, 6v22:D, 6v38:A, 6v38:B, 6v38:C, 6v38:D, 6v5a:A, 7ynz:A, 7ynz:C, 7ynz:E, 7ynz:G, 7yo0:A, 7yo0:C, 7yo0:E, 7yo0:G, 7yo1:A, 7yo1:C, 7yo1:E, 7yo1:G, 7yo3:A, 7yo5:A, 7yo5:B, 7yo5:C, 7yo5:D
22 6p2l:A 685 62 0.2368 0.0263 0.2903 6.2
23 6v35:A 914 13 0.1184 0.0098 0.6923 6.7 6v35:D, 6v35:B, 6v35:C, 8z3s:A, 8z3s:B, 8z3s:C, 8z3s:D
24 5m85:A 159 34 0.1447 0.0692 0.3235 8.3 5m82:A
25 3tri:A 272 33 0.1579 0.0441 0.3636 9.0 3tri:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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