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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRSLFHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNE
VVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNA
KMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISDCFIDGNENGDLLWDFLTE
TCNFNATAPPDLRAELGKDLQEPEFSAKKEGKVLFNNTLSFIVIEA

The query sequence (length=286) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2aou:B 289 288 1.0000 0.9896 0.9931 0.0 2aot:A, 2aot:B, 2aou:A, 2aov:A, 2aov:B, 2aow:A, 2aow:B, 2aox:A, 2aox:B, 1jqd:A, 1jqd:B, 1jqe:A, 1jqe:B
2 7mgv:A 333 197 0.1503 0.1291 0.2183 0.35 7mgv:B
3 5ig9:A 319 180 0.1364 0.1223 0.2167 1.1 5ig9:H, 5ig9:B, 5ig9:C, 5ig9:D, 5ig9:E, 5ig9:F, 5ig9:G
4 3lqc:A 151 119 0.0979 0.1854 0.2353 2.6
5 4fi1:A 371 109 0.0944 0.0728 0.2477 2.8 4jqe:A, 4jr7:A, 4lfi:A, 4lfi:B, 4mwh:A
6 1i8n:A 89 72 0.0594 0.1910 0.2361 3.0 1i8n:B
7 8bic:B 323 74 0.0769 0.0681 0.2973 3.4 8bic:A
8 4krh:A 430 137 0.1014 0.0674 0.2117 5.0 4krh:B, 4kri:A, 4kri:B, 4kri:C
9 8bgt:A 319 35 0.0455 0.0408 0.3714 5.8 8bgt:B, 8bgx:A, 8bgx:B, 8bgx:C, 8bgx:D, 8bgy:A, 8bgy:B, 8bgy:C, 8bgy:D, 8bgz:A, 8bgz:B, 8bgz:C, 8bgz:D, 8bh0:A, 8bh0:B, 8bh0:C, 8bh0:D, 8bh0:E, 8bh0:F, 8bh0:G, 8bh0:H, 8bib:A, 8bib:B, 8bib:C, 8bib:D, 8bid:A, 8bid:B, 8bid:C, 8bid:D, 8bih:A, 8bih:B, 8bih:C, 8bih:D, 8bih:E, 8bih:F, 8bih:G, 8bih:H, 8bih:I, 8bih:J, 8bih:K, 8bih:L
10 4exo:A 146 27 0.0350 0.0685 0.3704 6.7
11 1ryq:A 64 33 0.0385 0.1719 0.3333 7.0 8oki:I, 8p2i:I, 3p8b:A, 3p8b:C, 3qqc:E
12 6zj9:A 220 121 0.1119 0.1455 0.2645 7.2 6zjc:B, 6zjc:A, 6zjc:D, 6zjc:C
13 6cp3:C 508 53 0.0594 0.0335 0.3208 7.3 4b2q:A, 4b2q:B, 4b2q:C, 4b2q:a, 4b2q:b, 4b2q:c, 6b8h:K, 6b8h:B, 6b8h:C, 6b8h:n, 6b8h:W, 6b8h:X, 6cp3:A, 6cp3:B, 6cp6:A, 6cp6:B, 6cp6:C, 8f29:A, 8f29:B, 8f29:C, 8f2k:A, 8f2k:B, 8f2k:C, 8f39:A, 8f39:B, 8f39:C, 8fl8:A, 8fl8:B, 8fl8:C, 2hld:A, 2hld:B, 2hld:C, 2hld:J, 2hld:K, 2hld:L, 2hld:S, 2hld:T, 2hld:U, 7md2:A, 7md2:C, 7md3:A, 7md3:B, 7md3:C, 3oe7:A, 3oe7:B, 3oe7:C, 3oe7:J, 3oe7:K, 3oe7:L, 3oe7:S, 3oe7:T, 3oe7:U, 3oee:A, 3oee:B, 3oee:C, 3oee:J, 3oee:K, 3oee:L, 3oee:S, 3oee:T, 3oee:U, 3oeh:A, 3oeh:B, 3oeh:C, 3oeh:J, 3oeh:K, 3oeh:L, 3oeh:S, 3oeh:T, 3oeh:U, 3ofn:A, 3ofn:B, 3ofn:C, 3ofn:J, 3ofn:K, 3ofn:L, 3ofn:S, 3ofn:T, 3ofn:U, 7tjs:A, 7tjs:B, 7tjs:C, 7tjt:A, 7tjt:B, 7tjt:C, 7tju:A, 7tju:B, 7tju:C, 7tjv:A, 7tjv:B, 7tjv:C, 7tjw:A, 7tjw:B, 7tjw:C, 7tjx:A, 7tjx:B, 7tjx:C, 2wpd:A, 2wpd:B, 2wpd:C, 2xok:A, 2xok:B, 2xok:C, 3zia:A, 3zia:B, 3zia:C, 3zia:K, 3zia:L, 3zia:M, 3zry:A, 3zry:B, 3zry:C
14 7md2:B 458 53 0.0594 0.0371 0.3208 9.6
15 7bam:A 1904 66 0.0664 0.0100 0.2879 9.7 7bam:B, 7ban:A, 7ban:B, 7bao:A, 7plp:A, 7plp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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