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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRPLTHEETKTFFEKLAQYIGKNITHLIDRPDDPHCFRLQKDRVYYVSERAMKMATSVARQNLMSLGICFGKFTKTNKFR
LHITALDYIAQYARYKIWVKSNGEMPFLYGNHVLKAHVGRITDDTPQHQGVVIYSMNDTPLGFGVTARSTLELRRLEPTA
IVAFHQADVGEYLR

The query sequence (length=174) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8esq:l 174 174 1.0000 1.0000 1.0000 1.01e-132 8esr:l
2 7nac:l 176 174 0.6954 0.6875 0.6954 6.18e-94 6elz:l, 6em5:l, 7ohr:l, 7r6k:l, 7r7a:l, 7r7c:l, 8v83:l, 8v84:l, 8v87:l
3 8fkt:NH 180 174 0.6437 0.6222 0.6437 1.52e-88 8fku:NH, 8fkv:NH, 8fkw:NH, 8fkx:NH, 8fky:NH
4 8i9r:CG 177 176 0.6149 0.6045 0.6080 3.20e-74 8i9t:CG, 8i9v:CG, 8i9w:CG, 8i9x:CG, 8i9y:CG, 8i9z:CG, 8ia0:CG
5 5x4j:A 471 78 0.1322 0.0488 0.2949 1.4 5x4h:A, 5x4i:A, 5x4k:A
6 3hch:A 145 33 0.0632 0.0759 0.3333 2.4 3hch:B
7 7e43:B 324 31 0.0690 0.0370 0.3871 2.6 7e43:A
8 7aoi:BI 323 56 0.0862 0.0464 0.2679 2.9 6hiv:BI, 6hix:BI, 6yxx:BI, 6yxy:BI
9 7xx4:A 395 48 0.0862 0.0380 0.3125 2.9 2iyf:A, 2iyf:B, 4m83:A, 4m83:B, 7xx4:B
10 2xa7:M 428 60 0.1092 0.0444 0.3167 3.6 5c7z:A, 5fpi:A, 7oiq:AAA, 7oit:AAA, 6qh6:M, 6qh7:M, 8t1o:M, 5wrl:A, 5wrm:A, 6yaf:M
11 7og1:MMM 406 60 0.1092 0.0468 0.3167 3.8 6bnt:A, 2bp5:M, 1bw8:A, 1bxx:A, 3h85:A, 1hes:A, 1i31:A, 7oiq:BBB, 2pr9:A, 5wrk:A
12 7rwa:M 379 60 0.1092 0.0501 0.3167 4.2 7rwa:m
13 7cta:A 329 41 0.0690 0.0365 0.2927 7.1 7ct9:A, 7ct9:B, 7cta:B
14 7vgh:B 1183 70 0.1207 0.0178 0.3000 9.8 7vgi:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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