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BioLiP
>protein
MRNYCTKTFGSAFSVTVVPTLKDNFSYLINDHTTHTLAAVDVNADYKPILTYIEEHLTYTFSTILSTHKHWDHSGGNAKL
KAELVPVVVVGGANDSIPAVTKPVREGDRVQVGDLSVEVIDAPCHTRGHVLYKVQHPQHPNDGVALFTGDTMFIAGIGAF
FEGDEKDMCRAMEKVYHIHKGNDYALDKVTFIFPGHEYTSGFMTFSEKTFPDRASDDLAFIQAQRAKYAAAVKTGDPSVP
SSLAEEKRQNLFLRVADPAFVAKMNQGNAHALMMYLYNA

The query sequence (length=279) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2p18:A 283 283 1.0000 0.9859 0.9859 0.0 2p1e:A
2 1qh3:A 260 245 0.3262 0.3500 0.3714 1.36e-42 1qh3:B, 1qh5:A, 1qh5:B
3 8ewo:A 259 254 0.3082 0.3320 0.3386 1.15e-32 8ewo:B, 8ewo:C
4 2q42:A 254 251 0.3011 0.3307 0.3347 2.76e-32 2q42:B, 1xm8:A, 1xm8:B
5 6rz0:A 251 256 0.2652 0.2948 0.2891 5.97e-17 6s0i:A
6 2qed:A 252 255 0.2509 0.2778 0.2745 1.96e-15
7 4ysb:A 225 188 0.1864 0.2311 0.2766 7.37e-13 4ysb:B
8 2xf4:A 210 206 0.2222 0.2952 0.3010 3.85e-10
9 2gcu:A 244 187 0.2043 0.2336 0.3048 7.52e-10 2gcu:B, 2gcu:C, 2gcu:D
10 4chl:B 237 182 0.1649 0.1941 0.2527 1.33e-08 4chl:A
11 3r2u:A 348 257 0.2294 0.1839 0.2490 2.57e-05 3r2u:B, 3r2u:C, 3r2u:D
12 5ngg:A 274 103 0.1111 0.1131 0.3010 4.01e-05 2gmn:A, 2gmn:B, 3lvz:A, 3lvz:B, 5ngg:B, 5njw:A, 5njw:B, 5wcm:A, 5wcm:B
13 4ysk:A 294 211 0.1720 0.1633 0.2275 5.38e-05 4ysk:B, 4ysl:A, 4ysl:B
14 1l9y:A 263 148 0.1470 0.1559 0.2770 1.70e-04 1jt1:A, 1k07:A, 1k07:B, 1l9y:B, 5w90:A, 5wck:A, 5wck:B
15 3tp9:A 473 145 0.1398 0.0825 0.2690 2.05e-04 3tp9:B
16 2zwr:B 207 202 0.1828 0.2464 0.2525 2.30e-04 2zwr:A, 2zzi:A, 2zzi:B
17 6k4t:A 260 93 0.0968 0.1038 0.2903 0.003 5axo:A, 5axr:A, 5aya:A, 5b15:A, 5b1u:A, 6k4x:A, 3vpe:A, 3vqz:A
18 4efz:A 295 210 0.1792 0.1695 0.2381 0.011 4efz:B
19 5k0w:B 271 104 0.0932 0.0959 0.2500 0.020 5k0w:A
20 8u00:A 242 106 0.0860 0.0992 0.2264 0.16 8u00:B
21 6nc5:A 259 153 0.1362 0.1467 0.2484 0.18 6dqh:A, 6dr8:A
22 7l0b:A 202 196 0.1720 0.2376 0.2449 0.22 7l0b:B, 7l0b:C, 7l0b:D
23 6n36:A 265 104 0.1039 0.1094 0.2788 0.23
24 4ad9:A 288 155 0.1290 0.1250 0.2323 0.23 4ad9:B, 4ad9:C, 4ad9:D, 4ad9:E, 4ad9:F
25 6e0s:A 264 98 0.0932 0.0985 0.2653 0.23
26 6auf:B 273 93 0.0896 0.0916 0.2688 0.41
27 5aeb:B 266 85 0.0824 0.0865 0.2706 0.50 5aeb:A
28 7luu:A 266 90 0.0896 0.0940 0.2778 0.77
29 4j75:A 374 77 0.0860 0.0642 0.3117 1.1 4j75:B, 4jfa:A, 4jfa:B, 4jfa:D
30 4jfa:C 348 77 0.0860 0.0690 0.3117 1.3
31 6mfi:A 264 89 0.0824 0.0871 0.2584 1.5
32 2zo4:A 301 84 0.0753 0.0698 0.2500 1.5
33 3dha:A 254 102 0.0932 0.1024 0.2549 1.7 2a7m:A, 2br6:A, 2btn:A, 3dhb:A, 3dhc:A, 5eh9:A, 5eht:A, 4j5f:A, 4j5h:A, 7l5f:A
34 7ev5:A 209 139 0.1254 0.1675 0.2518 1.7
35 6u10:A 269 88 0.0896 0.0929 0.2841 2.7 7l52:A, 7l91:A, 6u0y:A, 6u0y:B, 6u0y:C, 6u0y:D, 6u0z:A, 6u13:A, 6u2y:A, 6u2z:A, 6uac:A, 6uaf:A, 6uah:A, 7uhh:A, 7uhi:A, 7uhj:A, 7uhk:A, 7uhl:A, 7uhm:A, 7uhn:A, 7uho:A, 7uhp:A, 7uhq:A, 7uhr:A, 7uht:A
36 4le6:A 257 117 0.1147 0.1245 0.2735 2.7 4le6:B, 4le6:C, 4le6:D, 4le6:E
37 7qte:B 284 34 0.0430 0.0423 0.3529 3.2 7qtd:A, 7qtd:B, 7qtd:C, 7qtd:D, 7qte:A, 7qtg:A, 7qtg:B
38 5c2t:D 129 30 0.0430 0.0930 0.4000 3.7 5c2t:H, 5c3j:D, 5c3j:H, 3vr8:D, 3vr8:H, 3vr9:D, 3vr9:H, 3vra:D, 3vra:H, 3vrb:D, 3vrb:H, 4ysx:D, 4ysx:H, 4ysy:D, 4ysy:H, 4ysz:D, 4ysz:H, 4yt0:D, 4yt0:H, 4ytm:D, 4ytm:H, 4ytn:D, 4ytn:H
39 3qi8:A 424 18 0.0358 0.0236 0.5556 4.3
40 3kl7:A 220 96 0.1004 0.1273 0.2917 5.3
41 8urw:Z 1235 31 0.0430 0.0097 0.3871 5.5 8syi:Z
42 3nxl:C 425 85 0.0896 0.0588 0.2941 6.7 3nxl:A, 3nxl:B, 3nxl:D
43 6xfr:B 216 40 0.0502 0.0648 0.3500 7.6 6xfr:A
44 8hkj:B 430 73 0.0681 0.0442 0.2603 7.7 8hkj:A, 8hkj:C, 8hkj:D, 8hkj:E, 8hkj:F, 8hkj:H, 8hkj:J, 8hkj:K, 8hkj:L
45 4rzq:A 422 79 0.0681 0.0450 0.2405 8.6 4mv6:A, 4mv7:A, 4mv9:A
46 7a76:A 326 26 0.0466 0.0399 0.5000 8.7 7a76:B, 7a76:C, 7a76:D
47 4yew:C 71 54 0.0573 0.2254 0.2963 9.5 6o6k:B, 6oaj:D, 4yex:C, 4yft:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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