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BioLiP
>protein
MRLTALVSGHVQGVGYRLFVQRYARDLGLHGYAENLSDGKVEVIAEGDEDALNRLLHWLRRGPPHARVQAVDTQYSEETG
LREFHIY

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8jfs:A 87 87 1.0000 1.0000 1.0000 2.42e-60 8jfs:B
2 4hi1:A 88 72 0.4023 0.3977 0.4861 7.37e-16 4hi1:B, 4hi1:C
3 4g9i:A 766 81 0.3448 0.0392 0.3704 2.90e-11 4g9i:B, 4g9i:C, 4g9i:D, 4g9i:E, 4g9i:F
4 1gxu:A 88 66 0.3103 0.3068 0.4091 4.74e-07
5 3vth:A 753 78 0.2759 0.0319 0.3077 5.62e-04 3vth:B, 3vti:A, 3vti:B
6 3njv:A 508 70 0.2184 0.0374 0.2714 0.13 3njx:A, 1nkg:A, 2xhn:A, 2xhn:B
7 8der:L 105 49 0.1379 0.1143 0.2449 0.42
8 5l7j:A 406 40 0.1839 0.0394 0.4000 0.64 6ia6:A, 5l7l:A
9 2a68:C 1119 49 0.2414 0.0188 0.4286 1.4 2a68:M, 2a69:C, 2a69:M, 2a6h:C, 2a6h:M, 3aoh:C, 2be5:C, 2be5:M, 6cuu:C, 5d4c:C, 5d4c:M, 5d4d:C, 5d4d:M, 5d4e:C, 5d4e:M, 3dxj:C, 3dxj:M, 5e17:C, 5e18:C, 7eh0:C, 7eh1:C, 7eh2:C, 7eh2:M, 3eql:C, 3eql:M, 4g7h:C, 4g7h:M, 4g7o:C, 4g7o:M, 4g7z:C, 4g7z:M, 8hsr:I, 5i2d:C, 5i2d:N, 1i6v:C, 1iw7:C, 1iw7:M, 6kqd:C, 6kqd:M, 6kqe:C, 6kqf:C, 6kqg:C, 6kqh:C, 6kql:C, 6kqm:C, 6kqn:C, 6l74:C, 6lts:C, 6m6a:C, 6m6c:C, 7mlb:C, 7mli:C, 7mlj:C, 4mq9:C, 2o5i:C, 2o5i:M, 2o5j:C, 2o5j:M, 4oin:C, 4oio:C, 4oip:C, 4oiq:C, 4oir:C, 6ovr:C, 6ovy:C, 6ow3:C, 6oy5:C, 6oy6:C, 6oy7:C, 6p70:C, 6p71:C, 2ppb:C, 2ppb:M, 4q4z:C, 4q5s:C, 7rdq:C, 1smy:C, 1smy:M, 5tmc:C, 5tmf:C, 5vo8:C, 5voi:C, 8w8n:C, 8w8o:C, 8w8p:C, 6wox:C, 6woy:C, 4wqs:C, 4wqs:M, 5x21:C, 5x22:C, 5x22:M, 4xln:C, 4xln:I, 4xlr:C, 4xlr:I, 1ynj:C, 1ynn:C, 1zyr:C, 1zyr:M
10 8hsg:I 1096 49 0.2414 0.0192 0.4286 1.4 3aoi:C, 3aoi:H, 3aoi:M, 4gzy:C, 4gzz:C
11 7kmq:B 754 41 0.1954 0.0225 0.4146 2.7 7kmq:A
12 7yeo:B 382 45 0.2069 0.0471 0.4000 4.8 7yeo:A
13 4fe7:A 380 31 0.1379 0.0316 0.3871 7.2
14 3lst:A 333 31 0.1379 0.0360 0.3871 8.2 3lst:B
15 6vvo:A 448 15 0.0920 0.0179 0.5333 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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