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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRLAYVKNHEIYGEKLLGLTLRERIEKTLQRAGFDVRFFDELSLEEAEDYLIILEPVLILERDLLLEGRKILVSDGFTVG
YFFGGDFRTVFDGNLQSSIEKYLSLNNLESYEIWAIKLSNDNLKTAEKLLLSSLIGRGLFAAIFLPIARLLADWGVSPDA
VTVVGTLGVMAGALIFYPMGQLFWGTVVITVFVFSDIIDGLMARLLFREGPWGAFLDSYLDRVGDSSVFTGIVIWFFLGG
ANPTIAILALICLVLSSLVSYSKARAEGLGLTANVGIAERSERLVVVLVATGLVGLGIPSWVLLVVLIVLAIASVVTIFQ
RVLTVREQAKAWTA

The query sequence (length=334) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5d92:D 342 342 1.0000 0.9766 0.9766 0.0 5d91:A, 5d92:A, 5d92:B, 5d92:C
2 6wm5:A 337 327 0.6677 0.6617 0.6820 1.79e-149 6wm5:C, 6wmv:A, 6wmv:C
3 4o6m:B 341 349 0.5719 0.5601 0.5473 3.27e-106 4o6m:A, 4o6n:A, 4o6n:B, 4q7c:A, 4q7c:B
4 6h5a:B 209 191 0.2455 0.3923 0.4293 8.71e-38 6h59:A, 6h59:B, 6h5a:A
5 4mnd:A 408 214 0.1617 0.1324 0.2523 7.39e-05
6 6m53:B 339 100 0.0838 0.0826 0.2800 0.99 7bp1:A, 7bp1:C, 7bp1:D, 7bpc:A, 7bpc:C, 6m53:A, 6m53:C, 6m53:D
7 8gyw:B 380 211 0.1467 0.1289 0.2322 3.0 8gyw:A, 8gyx:B, 8gyx:A
8 6pdq:D 142 29 0.0329 0.0775 0.3793 6.5 6pdq:A
9 1e3a:B 560 69 0.0569 0.0339 0.2754 6.8 1ai4:B, 1ai5:B, 1ai6:B, 1ai7:B, 1ajn:B, 1ajp:B, 1ajq:B, 1fxh:B, 1fxv:B, 1gk9:B, 1gkf:B, 1gm7:B, 1gm8:B, 1gm9:B, 1h2g:B, 1jx9:B, 1k5q:B, 1k5s:B, 1k7d:B, 1kec:B, 1pnk:B, 1pnl:B, 1pnm:B
10 8ero:A 364 124 0.1048 0.0962 0.2823 7.9 8ero:B, 8erp:B, 8erp:A
11 5fl7:H 113 58 0.0449 0.1327 0.2586 8.4
12 8wcn:A 379 38 0.0389 0.0343 0.3421 8.7 8wcn:B
13 7pkt:b 304 29 0.0389 0.0428 0.4483 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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