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BioLiP
>protein
MRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFA
SNTEEVIADEKLFQKMSLVQQFISPENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA
SNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAKSISLDEAEFEKNM
ESARAR

The query sequence (length=246) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2efe:A 246 246 1.0000 1.0000 1.0000 0.0 2efe:C, 4g01:A
2 1txu:A 254 189 0.2764 0.2677 0.3598 1.43e-31
3 3l22:A 429 36 0.0610 0.0350 0.4167 1.8
4 5ze9:F 456 48 0.0650 0.0351 0.3333 5.6 7coq:F, 7dqd:E, 7dqd:F, 7dqd:M, 7dqd:N, 8igv:D, 8igv:E, 8igw:D, 8igw:J, 8igw:L, 5knc:F, 3vr3:E, 3vr3:F, 3vr6:E, 3vr6:F, 7vw7:E, 7vw7:F, 5ze9:D, 5ze9:E
5 6x5b:B 149 56 0.0732 0.1208 0.3214 6.2 6x5b:E, 6x5b:K, 6x5c:B, 6x5c:G, 6x5c:F
6 7mjr:A 899 57 0.0650 0.0178 0.2807 6.2
7 3qrf:G 82 73 0.0772 0.2317 0.2603 7.0 3qrf:F, 3qrf:H, 3qrf:I, 4wk8:F, 4wk8:G
8 2dja:A 84 26 0.0447 0.1310 0.4231 8.6
9 4o1k:A 211 40 0.0528 0.0616 0.3250 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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