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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRIVAADTGGAVLDESFQPVGLIATVAVLVEKPYKTSKRFLVKYADPYNYDLSGRQAIRDEIELAIELAREVSPDVIHLD
STLGGIEVRKLDESTIDALQISDRGKEIWKELSKDLQPLAKKFWEETGIEIIAIGKSSVPVRIAEIYAGIFSVKWALDNV
KEKGGLLVGLPRYMEVEIKKDKIIGKSLDPREGGLYGEVKTEVPQGIKWELYPNPLVRRFMVFEITS

The query sequence (length=227) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4yor:A 227 227 1.0000 1.0000 1.0000 1.15e-163 4yor:B, 4yot:A, 4yot:B, 4yot:C, 4you:A, 4you:C, 4yov:A, 4yov:C, 4yov:E, 4yow:A, 4yow:C, 4yow:E, 4yox:A, 4yox:C, 4yox:E, 4yoy:A, 4yoy:C, 4yoy:E
2 5chi:A 230 227 0.7753 0.7652 0.7753 8.57e-133 5chi:B, 5chi:C
3 4you:B 199 227 0.8722 0.9950 0.8722 8.92e-132
4 4nu0:A 212 76 0.0969 0.1038 0.2895 0.65 4nu0:B, 4w5j:A, 4w5j:B, 4w5j:C, 4w5j:D
5 4mz0:A 896 50 0.0705 0.0179 0.3200 1.0
6 6muk:A 363 30 0.0529 0.0331 0.4000 1.3
7 7tom:A 498 32 0.0573 0.0261 0.4062 1.5 7tol:A
8 8bz6:A 606 64 0.0837 0.0314 0.2969 3.9 8bz6:B, 8bz6:C, 8bz6:D, 8bz6:E, 8bz6:F, 8bz7:A, 8bz7:B, 8bz7:C, 8bz7:D, 8bz7:E, 8bz7:F, 8bz8:A, 8bz8:B, 8bz8:C, 8bz8:D, 8bz8:E, 8bz8:F
9 8cjf:B 638 39 0.0573 0.0204 0.3333 4.4 8cjd:A, 8cjd:B, 8cje:A, 8cje:B, 8cje:C, 8cje:D, 8cjf:A, 8cjg:A, 8cjg:B, 8jz2:A, 8jz3:A, 8jz4:A, 8jz5:A, 8jz6:A
10 4why:L 218 53 0.0749 0.0780 0.3208 4.4 5aum:L, 5aum:B, 4wht:B, 4wht:D, 4wht:F, 4wht:H, 4wht:J, 4wht:L, 4wht:N, 4wht:R, 4wht:P, 4wht:T, 4wht:V, 4wht:Y, 4why:J, 4why:N, 4why:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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