Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRILAIDTATEACSVALWNDGTVNAHFELCPREHTQRILPMVQDILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQG
LALGAELPMIGVSTLMTMAQGAWRKNGATRVLAAIDARMGEVYWAEYQRDENGIWHGEETEAVLKPEIVHERMQQLSGEW
VTVGTGWQAWPDLGKESGLVLRDGEVLLPAAEDMLPIACQMFAEGKTVAVEHAEPVYLRNNVAWKKLP

The query sequence (length=228) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4ydu:C 230 228 1.0000 0.9913 1.0000 5.62e-170 4ydu:D, 6z81:C, 6z81:D
2 6z81:A 342 109 0.1404 0.0936 0.2936 4.43e-09 4wq4:A, 4wq4:B, 4wq5:A, 4wq5:B, 4ydu:A, 4ydu:B, 6z81:B, 3zet:B, 3zeu:B, 3zeu:E
3 8iey:A 329 112 0.1360 0.0942 0.2768 1.28e-08 8ifx:A
4 6n9a:D 330 123 0.1360 0.0939 0.2520 4.97e-06 6nak:B, 6nak:G, 6s84:A, 6s84:D
5 2ivn:A 325 93 0.1184 0.0831 0.2903 2.52e-05 2ivo:A, 2ivo:B, 2ivo:C, 2ivp:A
6 6gwj:K 334 35 0.0702 0.0479 0.4571 0.008
7 3wuh:B 350 109 0.1228 0.0800 0.2569 0.050 3wuh:A
8 8k20:A 337 67 0.0789 0.0534 0.2687 0.081
9 6nbj:A 378 64 0.0877 0.0529 0.3125 0.34 4k25:A, 6nbj:B
10 3en9:A 519 69 0.0746 0.0328 0.2464 0.71 3en9:B, 3enh:A, 3enh:B, 5jmv:A, 5jmv:B, 5jmv:C, 2vwb:A, 2vwb:B
11 2j6x:H 348 44 0.0789 0.0517 0.4091 0.97 8ufy:B, 2zfa:B
12 2nli:B 326 44 0.0789 0.0552 0.4091 1.0
13 2du2:A 374 44 0.0789 0.0481 0.4091 1.1 2du2:B, 2du2:C, 2du2:D, 2e77:A, 2e77:B, 2e77:C, 2e77:D, 5ebu:A, 5ebu:B, 5ebu:C, 5ebu:D, 5ebu:E, 5ebu:F, 5ebu:G, 5ebu:H, 7f1y:A, 7f1y:B, 7f20:A, 7f20:B, 7f21:A, 7f21:B, 7f22:A, 7f22:B, 2j6x:A, 2j6x:B, 2j6x:C, 2j6x:D, 2j6x:E, 2j6x:F, 2j6x:G, 2nli:A, 4rje:A, 4rje:B, 4rje:C, 4rje:D, 8ufy:A, 4yl2:A, 4yl2:B, 4yl2:C, 4yl2:D, 2zfa:A
14 8ide:A 929 62 0.0833 0.0205 0.3065 1.4
15 6w6j:D 707 106 0.1360 0.0438 0.2925 2.6 6dju:D, 6dju:E, 6djv:D, 6djv:E, 6djv:F, 7l6n:D, 7l6n:E, 7l6n:F, 6w6e:D, 6w6e:E, 6w6e:F, 6w6g:D, 6w6g:E, 6w6h:D, 6w6h:E, 6w6i:D, 6w6i:E, 6w6j:E
16 7r9g:A 386 38 0.0526 0.0311 0.3158 3.4 7r9f:A
17 3eno:A 329 76 0.0789 0.0547 0.2368 3.5 3eno:B
18 7u2v:A 114 37 0.0614 0.1228 0.3784 4.0 7u2v:B
19 6bfg:A 373 49 0.0833 0.0509 0.3878 4.5 2a7n:A, 2a7p:A, 2a85:A, 6bfg:B, 3giy:A, 1p4c:A, 1p5b:A
20 1huv:A 349 49 0.0833 0.0544 0.3878 4.8
21 7o9k:t1 46 29 0.0439 0.2174 0.3448 4.9 6gaw:CL, 6gb2:CL, 7l08:TA, 7l20:TA, 7nqh:CL, 7nql:CL, 7nsh:CL, 7nsi:CL, 7nsj:CL, 7o9k:t3, 7o9m:t1, 7o9m:t3, 7og4:t1, 7og4:t3, 8oin:B1, 8oiq:B1, 7po4:w, 6vlz:TA, 6vmi:TA, 6ydp:CL, 6ydw:CL, 6zs9:t3, 6zsa:t1, 6zsa:t3, 6zsb:t1, 6zsb:t3, 6zsc:t1, 6zsc:t3, 6zsd:t1, 6zsd:t3, 6zse:t1, 6zse:t3, 6zsg:t1, 6zsg:t3
22 3flo:E 433 30 0.0570 0.0300 0.4333 5.1 3flo:G, 3flo:A, 3flo:C
23 3jct:q 183 39 0.0658 0.0820 0.3846 5.8 7btb:q, 6m62:q, 7ohq:q, 7uoo:q, 7uqb:q, 7uqz:q, 7v08:q, 6yly:q
24 4cn9:A 397 86 0.1009 0.0579 0.2674 6.3 4cn9:B
25 7txe:A 131 37 0.0614 0.1069 0.3784 7.1 7txe:B
26 3x2x:A 227 76 0.0789 0.0793 0.2368 9.4 3x2x:B, 3x30:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218