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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MRHYEIVLLVHPDQSDQVVGMVERYISQIKEADGQIHRLEDWGRRQLAYPINKIHKAHYILMNVECGQSTLDELEELFRY
NDAIIRNLIIRREH

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7m4u:f 104 94 1.0000 0.9038 1.0000 1.38e-66 7m4w:f, 7m4x:f, 7m4y:f, 7m4z:f, 7ryf:f, 7ryg:f, 7ryh:f, 7uvv:f, 7uvw:f, 7uvx:f, 7uvy:f, 7uvz:f, 7uw1:f, 6v39:f, 6v3a:f, 6v3b:f, 6v3e:f, 6ypu:g, 6yt9:g
2 8rd8:FG 102 92 0.7553 0.6961 0.7717 2.60e-50 8rdv:FG, 8rdw:FG
3 3j9z:SF 135 94 0.6915 0.4815 0.6915 1.92e-49 4a2i:F, 8a3l:F, 7abz:k, 7ac7:k, 7acj:k, 7acr:k, 4adv:F, 5afi:f, 7afi:F, 7afl:F, 7afo:F, 8akn:G, 8am9:G, 6awc:I, 9ax7:F, 9ax8:f, 8aye:F, 8b0x:F, 7b5k:f, 8b7y:H, 8bf7:j, 8bge:j, 8bgh:j, 8bh4:j, 8bhj:j, 8bhl:j, 8bhn:j, 8bhp:j, 8bil:j, 8bim:j, 7bod:F, 7boe:F, 7bof:F, 7bog:F, 7boh:F, 7boi:F, 6bu8:F, 6by1:AF, 6by1:BF, 6c4i:f, 8cai:F, 8cep:F, 8cgj:F, 8cgr:F, 8cgu:F, 9cg5:F, 9cg6:F, 9cg7:F, 7cpj:f, 7d6z:m, 7d80:G, 6dnc:SA, 8eiu:F, 8ekc:f, 8emm:F, 6enf:f, 6enj:f, 6enu:f, 8eyq:F, 8eyt:O, 9fbv:F, 8fiz:AN, 8fto:F, 8fzd:f, 8fze:f, 8fzf:f, 8fzg:f, 8fzh:f, 8fzi:f, 8fzj:f, 8g2u:e, 8g31:e, 8g34:e, 8g38:e, 8g6w:F, 8g7p:f, 8g7q:f, 8g7r:f, 8g7s:f, 8ghu:f, 6gwt:f, 6gxm:f, 6gxn:f, 6gxo:f, 6gxp:f, 6h4n:f, 5h5u:m, 6h58:f, 6h58:ff, 6hrm:k, 8hsp:F, 8htz:F, 8hu1:F, 6i7v:AF, 6i7v:BF, 8ifb:F, 8ifc:F, 5iqr:k, 5it8:AF, 5it8:BF, 5j5b:AF, 5j5b:BF, 5j7l:AF, 5j7l:BF, 5j88:AF, 5j88:BF, 5j8a:AF, 5j8a:BF, 3j9y:f, 5j91:AF, 5j91:BF, 3ja1:SF, 3jbu:F, 3jbv:F, 3jcd:f, 3jce:f, 3jcj:n, 3jcn:i, 5jc9:AF, 5jc9:BF, 7jss:K, 7jsw:K, 7jsz:K, 8jsg:n, 8jsh:n, 5jte:AF, 7jt1:K, 7jt2:K, 7jt3:K, 5ju8:AF, 7k00:F, 8k3o:F, 8k4e:F, 7k50:K, 7k51:K, 7k52:K, 7k53:K, 7k54:K, 7k55:K, 5kcr:1f, 5kcs:1f, 5kps:11, 5kpv:10, 5kpw:10, 5kpx:10, 5l3p:f, 6lkq:E, 7lv0:K, 5lza:f, 5lzb:f, 5lzc:f, 5lzd:f, 5lze:f, 5lzf:f, 7m5d:k, 5mdv:k, 5mdw:k, 5mdy:k, 5mdz:k, 5me0:F, 5me1:F, 5mgp:f, 5my1:F, 7n1p:SF, 7n2c:SF, 7n2u:SF, 7n2v:SF, 7n30:SF, 7n31:SF, 7nar:F, 7nas:F, 7nat:F, 7nau:F, 7nav:F, 7nax:F, 7nbu:F, 5no2:F, 5no3:F, 5no4:F, 5np6:I, 7nso:f, 7nsp:f, 7nsq:f, 5nwy:5, 7nwt:k, 7nww:j, 7o19:AF, 7o1a:AF, 7o1c:AF, 5o2r:f, 7o5h:F, 6o7k:n, 6o9j:f, 6o9k:f, 7oe0:F, 7oe1:F, 6ofx:K, 6og7:K, 6ogf:K, 6ogg:K, 6ogi:K, 7oi0:F, 7oif:j, 7oig:j, 7oii:j, 7oiz:F, 7oj0:F, 6om6:k, 6ore:k, 6orl:k, 6osk:k, 6osq:k, 6ost:k, 6ot3:k, 7ot5:j, 7otc:f, 6ouo:k, 8p16:k, 8p17:k, 8p18:k, 7p3k:F, 8peg:F, 8phj:F, 7pjs:f, 7pjt:f, 7pju:f, 7pjv:f, 7pjw:f, 7pjx:f, 7pjy:f, 7pjz:f, 8pkl:F, 8pva:F, 7q4k:AF, 8q4f:F, 6q97:k, 6q98:k, 6q9a:k, 8qbt:n, 7qg8:5, 7qgh:5, 7qgn:5, 7qgr:5, 8qk7:k, 8qoa:F, 8r3v:F1, 8r3v:F2, 8r6c:F, 8r8m:F, 8rcl:F1, 8rcl:F2, 8rcm:F1, 8rcm:F2, 8rcs:F1, 8rcs:F2, 8rct:F1, 8rct:F2, 7s1g:H, 7s1h:H, 7s1i:H, 7s1j:H, 7s1k:H, 7sa4:k, 7ss9:K, 7ssd:K, 7ssl:K, 7ssn:K, 7sso:K, 7ssw:K, 7st2:K, 7st6:K, 7st7:K, 8syl:f, 6szs:f, 8t5d:e, 8t5h:e, 6tbv:S061, 6tc3:S061, 7tos:S06, 4u1u:AF, 4u1u:CF, 4u1v:AF, 4u1v:CF, 4u20:AF, 4u20:CF, 4u24:AF, 4u24:CF, 4u25:AF, 4u25:CF, 4u26:AF, 4u26:CF, 4u27:AF, 4u27:CF, 5u4i:f, 5u9f:F, 5u9g:F, 7ug7:SF, 7uph:a, 8upo:L, 8upr:L, 8uql:L, 8uqm:L, 8uqp:L, 8ur0:L, 8urh:L, 8uri:L, 8urx:L, 8ury:L, 5uyk:F, 5uyl:F, 5uym:F, 5uyn:F, 5uyp:F, 5uyq:F, 5uz4:F, 4v4h:AF, 4v4h:CF, 4v4q:AF, 4v4q:CF, 4v50:AF, 4v50:CF, 4v52:AF, 4v52:CF, 4v53:AF, 4v53:CF, 4v54:AF, 4v54:CF, 4v55:AF, 4v55:CF, 4v56:AF, 4v56:CF, 4v57:AF, 4v57:CF, 4v5b:BF, 4v5b:DF, 4v5h:AF, 4v5y:AF, 4v5y:CF, 4v64:AF, 4v64:CF, 4v65:AT, 4v66:AT, 4v69:AF, 4v6c:AF, 4v6c:CF, 4v6d:AF, 4v6d:CF, 4v6e:AF, 4v6e:CF, 4v6k:BJ, 4v6l:AJ, 4v6m:AF, 4v6n:BI, 4v6o:AI, 4v6p:AI, 4v6q:AI, 4v6r:AI, 4v6s:BH, 4v6t:AF, 4v6v:AF, 4v6y:AF, 4v6z:AF, 4v70:AF, 4v71:AF, 4v72:AF, 4v73:AF, 4v74:AF, 4v75:AF, 4v76:AF, 4v77:AF, 4v78:AF, 4v79:AF, 4v7a:AF, 4v7b:AF, 4v7c:AF, 4v7d:BF, 4v7i:BF, 4v7s:AF, 4v7s:CF, 4v7t:AF, 4v7t:CF, 4v7u:AF, 4v7u:CF, 4v7v:AF, 4v7v:CF, 4v85:AF, 4v89:AF, 4v9c:AF, 4v9c:CF, 4v9d:AF, 4v9d:BF, 4v9o:BF, 4v9o:DF, 4v9o:FF, 4v9o:HF, 4v9p:BF, 4v9p:DF, 4v9p:FF, 4v9p:HF, 8vs9:S06, 8vsa:S06, 6vu3:L, 6vwl:e, 6vwm:e, 6vwn:e, 6vyq:L, 6vyr:L, 6vys:L, 6vyt:L, 6vyu:L, 6vyw:L, 6vyx:L, 6vyy:L, 6vyz:L, 6vz2:L, 6vz3:L, 6vz5:L, 6vz7:L, 6vzj:L, 6w77:F, 6w7m:F, 6w7w:E, 5wdt:f, 6wd0:K, 6wd1:K, 6wd2:K, 6wd3:K, 6wd4:K, 6wd5:K, 6wd6:K, 6wd7:K, 6wd8:K, 6wd9:K, 6wda:K, 6wdb:K, 6wdc:K, 6wdd:K, 6wde:K, 6wdf:K, 6wdg:K, 6wdh:K, 6wdi:K, 6wdj:K, 6wdk:K, 6wdl:K, 6wdm:K, 5we4:f, 5we6:f, 4wf1:AF, 4wf1:CF, 5wf0:f, 5wfk:f, 5wfs:f, 6wnv:K, 6wnw:K, 4woi:AF, 4woi:DF, 4www:QF, 4www:XF, 6x6t:L, 6x7f:L, 6x7k:L, 6x9q:L, 6xdq:L, 6xdr:L, 6xe0:E, 6xgf:L, 6xii:L, 6xij:L, 6xza:F1, 6xzb:F1, 6y69:f, 7y7c:F, 7y7d:F, 7y7e:F, 7y7f:F, 7y7g:F, 7y7h:F, 4ybb:AF, 4ybb:BF, 2ykr:F, 6ysr:f, 6yss:f, 6yst:f, 6ysu:f, 6ztj:AF, 6ztl:AF, 6ztm:AF, 6ztn:AF, 6zto:AF, 6ztp:AF, 7zta:S061, 6zu1:AF
4 7unr:f 106 93 0.7234 0.6415 0.7312 6.86e-49 8cd1:f, 6spc:f, 6spe:f, 6spf:f, 6spg:f, 7unu:f, 7unv:f, 7unw:f
5 6nqb:F 77 93 0.5319 0.6494 0.5376 3.11e-32
6 6w6k:F 57 92 0.4043 0.6667 0.4130 1.10e-19
7 8crx:F 96 94 0.3191 0.3125 0.3191 3.47e-16 8cwo:F
8 3r3t:A 95 94 0.2872 0.2842 0.2872 8.84e-15 3r3t:B
9 8cdu:T 95 95 0.2872 0.2842 0.2842 7.52e-14 8buu:f, 8cdv:T, 8cec:T, 8ced:T, 8cee:T, 6ha1:f, 6ha8:f, 6htq:f, 3j9w:AF, 7o5b:F, 8qcq:f, 7qgu:k, 7qh4:j, 8qpp:F, 7qv1:f, 7qv2:f, 7qv3:f, 8r55:F
10 6dzi:n 96 94 0.2872 0.2812 0.2872 7.61e-13 6dzk:F, 8fr8:g, 7kgb:f, 7msc:f, 7msh:f, 7msm:f, 7msz:f, 7mt2:f, 7mt3:f, 7mt7:f, 5o5j:F, 5o61:BF, 7sfr:f, 5v93:f, 8v9j:f, 8v9k:f, 8v9l:f, 8whx:g, 8wi7:g, 8wi9:g, 8wib:g, 8wid:g, 8wif:g, 5zeb:f, 5zep:f, 5zeu:f
11 7bgd:f 96 96 0.3191 0.3125 0.3125 1.24e-12 7aso:E, 7asp:n, 8bh6:f, 8bh7:f, 8byv:f, 6fxc:Af, 6fxc:Bf, 7kwg:f, 5li0:f, 5nd8:f, 5nd9:f, 5ngm:Af, 7nhl:g, 7nhm:g, 8p2f:g, 8p2g:g, 8p2h:g, 7p48:f, 6s0x:f, 6s13:f, 5t7v:SE, 5tcu:SE, 8y38:f, 8y39:f, 6yef:f
12 7nhk:g 97 93 0.2872 0.2784 0.2903 1.75e-10 6o8w:f, 6o8x:f, 6o8y:f, 6o8z:f, 6o90:f, 7p7q:g, 7p7r:g, 7p7s:g, 7p7t:g, 7p7u:g, 6w6p:f, 6wub:f
13 8uu8:f 95 92 0.2766 0.2737 0.2826 1.78e-10 7nhn:g, 8uu4:f, 8uu5:f, 8uu6:f, 8uu7:f, 8uu9:f
14 5myj:AF 97 96 0.2872 0.2784 0.2812 2.40e-08
15 5xyu:F 67 58 0.1809 0.2537 0.2931 9.04e-07
16 7jil:k 107 89 0.2553 0.2243 0.2697 1.22e-06
17 6yw5:FF 117 88 0.2234 0.1795 0.2386 0.012 6ywe:FF, 6ywx:FF, 6ywy:FF
18 7ooc:E 167 92 0.2766 0.1557 0.2826 0.026 7p6z:E, 7pah:E, 7pai:E, 7paj:E, 7pak:E, 7pal:E, 7pam:E, 7pan:E, 7pao:E, 7paq:E, 7par:E, 7pas:E, 7ph9:E, 7pha:E, 7phb:E, 7phc:E, 7pi8:E, 7pi9:E, 7pia:E, 7pib:E, 7pic:E, 7pio:E, 7pip:E, 7piq:E, 7pir:E, 7pis:E, 7pit:E
19 6xyw:Be 99 92 0.2021 0.1919 0.2065 0.40
20 6gqi:A 529 82 0.2340 0.0416 0.2683 1.0 6gqi:B, 5m0z:A, 5m10:A, 7v8o:A, 7v8o:B, 7v8r:A, 7v8s:A, 7v8s:B
21 8j51:A 510 73 0.2447 0.0451 0.3151 1.7 8j51:B, 8j52:A, 8j52:B
22 2x7q:A 306 47 0.1064 0.0327 0.2128 2.5
23 3s4l:A 197 45 0.1383 0.0660 0.2889 4.1
24 8fmw:F 97 47 0.1596 0.1546 0.3191 4.2
25 2akj:A 535 44 0.1489 0.0262 0.3182 4.2
26 3s7z:B 235 54 0.1383 0.0553 0.2407 5.0
27 8ci5:A 1258 34 0.1277 0.0095 0.3529 7.5
28 6s8b:B 154 33 0.1277 0.0779 0.3636 7.7 6s8b:A, 6s8b:C, 6s8e:A, 6s8e:B, 6s8e:C, 6s91:A, 6s91:B, 6s91:C, 6sh8:A, 6sh8:B, 6sh8:C, 6shb:A, 6shb:B, 6shb:C, 6sic:A, 6sic:B, 6sic:C
29 9fce:B 209 43 0.1596 0.0718 0.3488 9.1 9fce:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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