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BioLiP
>protein
MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG
RQITAQAWDGTTDY

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7evo:D 200 87 0.9043 0.4250 0.9770 2.79e-59 8hk1:D, 6n3e:A, 6n3f:C, 6nsx:A
2 6slo:A 214 92 0.2872 0.1262 0.2935 2.98e-09 6lur:B, 6lur:C, 6lur:D, 6lur:A, 6lur:E, 6slo:C, 6slo:D
3 6hip:A 104 94 0.3085 0.2788 0.3085 5.89e-06 6hip:B, 5lso:A, 5lso:B, 2peh:A, 2peh:B
4 5cxt:K 113 77 0.2553 0.2124 0.3117 2.33e-05 5cxt:A, 5cxt:C, 5cxt:E, 5cxt:G, 5cxt:I, 5cxt:M, 5cxt:O, 5cxt:Q, 4oz1:B, 4oz1:A, 4ru2:A, 4ru2:C, 4ru2:E, 4ru2:G, 4ru2:I, 4ru2:K, 4ru2:M, 4ru2:O, 4ru2:Q
5 5ith:A 80 77 0.2447 0.2875 0.2987 3.44e-04 5o3j:A
6 2adb:A 127 70 0.2128 0.1575 0.2857 6.12e-04 3zzy:A, 3zzy:B, 3zzz:A, 3zzz:B
7 7c06:A 193 60 0.2128 0.1036 0.3333 6.82e-04 7c06:G, 7c06:D, 7c06:J, 7c06:M, 7c06:P, 7c06:S, 7c06:V, 7c06:Y, 7c07:A, 7c07:G, 7c07:D, 7c07:J, 7c07:M, 7c07:P, 7c07:S, 7c07:V, 7c07:Y, 7c08:A, 7c08:G, 7c08:D, 7c08:J, 7c08:M, 7c08:P, 7c08:S, 7c08:V, 7c08:Y, 4yh8:A
8 4a8x:A 88 70 0.2340 0.2500 0.3143 6.90e-04
9 1jmt:A 98 52 0.1809 0.1735 0.3269 0.002
10 2i2y:A 150 52 0.1809 0.1133 0.3269 0.023 9asq:H, 5bmg:A, 5bmg:B, 5bmg:H, 5bmg:D, 5bmg:E, 5bmg:F, 5bmg:G, 5bmh:A, 3v3x:C, 3v3x:D
11 7sn6:B 105 69 0.2340 0.2095 0.3188 0.029 1o0p:A, 1opi:A, 7sn6:A
12 4lhv:E 148 46 0.1915 0.1216 0.3913 0.059
13 6xh2:A 93 61 0.1915 0.1935 0.2951 0.059 6cmn:A, 3k0j:D, 3k0j:C, 6xh0:A, 6xh1:A, 6xh3:A
14 6vaa:B 1153 44 0.1915 0.0156 0.4091 0.23
15 7kzv:V 1155 44 0.1915 0.0156 0.4091 0.23 8a9k:B
16 6snj:A 131 49 0.2128 0.1527 0.4082 0.30 6gbm:B
17 2n82:B 104 55 0.1809 0.1635 0.3091 0.42 2err:A, 7vrl:B
18 2x1f:A 94 50 0.1702 0.1702 0.3200 0.56 2km8:B, 2x1a:A
19 1a76:A 315 41 0.1489 0.0444 0.3415 0.64 1a77:A
20 7dco:4 174 50 0.1809 0.0977 0.3400 0.81 6g90:R, 5gm6:e, 5nrl:R, 7oqb:R, 7oqe:R, 5zwm:4
21 7b9v:Y 88 62 0.1383 0.1477 0.2097 0.92 6bk8:r, 7dco:p, 6exn:Y, 6g90:Y, 5gmk:a, 6j6g:a, 6j6h:a, 6j6n:a, 6j6q:a, 5lj3:Y, 5lj5:Y, 5mq0:Y, 5nrl:Y, 7oqb:Y, 7oqe:Y, 5wsg:X, 5y88:p, 5ylz:p, 5zwm:p, 5zwo:p
22 8h6e:4R 106 84 0.2234 0.1981 0.2500 1.2 8h6j:4R, 8qp8:R, 8qp9:R, 8qpk:R, 6qw6:R, 6qx9:R, 8qxd:R, 8r08:R, 8r0a:R
23 6tm5:P 492 37 0.1809 0.0346 0.4595 1.6
24 2leb:A 101 70 0.1809 0.1683 0.2429 1.8 2lec:A
25 1dwk:B 156 48 0.1489 0.0897 0.2917 1.8 1dwk:D, 1dwk:C, 1dwk:I, 1dwk:E, 1dwk:F, 1dwk:G, 1dwk:H, 1dwk:A, 1dwk:J, 2iu7:A, 2iu7:J, 2iu7:C, 2iu7:I, 2iu7:B, 2iu7:D, 2iu7:E, 2iu7:F, 2iu7:G, 2iu7:H, 2iuo:B, 2iuo:C, 2iuo:D, 2iuo:G, 2iuo:H, 2iuo:I, 2iv1:G, 2iv1:I, 2ivb:C, 2ivb:A, 2ivb:G, 2ivb:F, 2ivb:D, 2ivb:H, 2ivb:I, 2ivq:H, 2ivq:J, 8k6h:A, 8k6h:B, 8k6h:C, 8k6h:D, 8k6h:E, 8k6h:F, 8k6h:G, 8k6h:H, 8k6h:I, 8k6h:J, 8k6s:A, 8k6s:B, 8k6s:I, 8k6s:G, 8k6s:F, 8k6x:A, 8k6x:B, 8k6x:H, 8k6x:C, 8k6x:D, 8k6x:E, 8k6x:G, 8k6x:F, 8k6x:I, 8k6x:J
26 2j2s:A 72 25 0.1170 0.1528 0.4400 2.2 2jyi:A, 2kkf:A, 4nw3:A
27 8pv1:CI 152 60 0.1915 0.1184 0.3000 2.2 8i9p:CI, 8i9r:CI, 8i9t:CI, 8i9v:CI, 8i9w:CI, 8i9x:CI, 8i9y:CI, 8i9z:CI, 8ia0:CI, 8pv3:CI, 8pv4:CI, 8pv7:CI, 8pvk:CI
28 1gd2:I 40 33 0.1064 0.2500 0.3030 3.0
29 1ahp:A 796 18 0.1170 0.0138 0.6111 3.7 1ahp:B, 2asv:A, 2asv:B, 2av6:A, 2av6:B, 2aw3:A, 2aw3:B, 2azd:A, 2azd:B, 1e4o:A, 1e4o:B, 2ecp:A, 2ecp:B, 1l5v:A, 1l5v:B, 1l5w:A, 1l5w:B, 1l6i:A, 1l6i:B, 1qm5:A, 1qm5:B, 8rvk:A
30 1fnx:H 174 22 0.1064 0.0575 0.4545 4.4 1fxl:A, 1g2e:A
31 5k8e:A 473 30 0.1383 0.0275 0.4333 4.9 5l6f:A, 5l6g:A
32 5kw6:A 201 66 0.2021 0.0945 0.2879 5.3 5kvy:A, 5kvy:B, 5kw1:A, 5kw1:B, 5kw6:B, 7q8a:B, 7q8a:A, 2qfj:A, 2qfj:B, 7z3x:A, 7z3x:B
33 8wi0:A 1220 30 0.1170 0.0090 0.3667 8.0 8kci:A, 8wi2:A, 8wi5:A
34 2ccr:B 387 26 0.1170 0.0284 0.4231 8.4 2ccr:A, 2gft:A, 2gft:B, 2j74:A, 2j74:B, 1r8l:A, 1r8l:B, 1ur0:A, 1ur0:B, 1ur4:A, 1ur4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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