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BioLiP
>protein
MRACLKCKYLTNDEICPICHSPTSENWIGLLIVINPEKSEIAKKAGIDIKGKYALSVKE

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4zn3:B 67 58 0.9831 0.8657 1.0000 8.87e-38 3lpe:B, 3lpe:D, 3lpe:F, 3lpe:H, 4zn1:B
2 1ryq:A 64 58 0.4576 0.4219 0.4655 3.77e-14 8oki:I, 8p2i:I, 3p8b:A, 3p8b:C, 3qqc:E
3 9bct:I 65 64 0.4407 0.4000 0.4062 7.84e-09
4 5zvq:A 194 20 0.1695 0.0515 0.5000 0.057 8ab0:F, 8ab0:E, 8bpr:E, 8bpr:F
5 5z2v:B 197 50 0.2373 0.0711 0.2800 0.078 5z2v:A
6 1n7u:A 554 40 0.2373 0.0253 0.3500 0.81
7 2exu:A 192 74 0.3898 0.1198 0.3108 1.1
8 5ai2:A 54 20 0.1695 0.1852 0.5000 1.7 5ai3:A, 4ar3:A, 4ar4:A, 4ar5:A, 4ar6:A, 9bkl:A, 9bkp:A, 9bkt:A, 1bq8:A, 1bq9:A, 1brf:A, 1caa:A, 1cad:A, 1iu5:A, 1iu6:A, 4k9f:A, 3kyu:A, 3kyv:A, 3kyw:A, 3kyx:A, 3kyy:A, 5nw3:A, 5ome:A, 3ryg:A, 3rz6:A, 3rzt:A, 3ss2:A, 1vcx:A, 1zrp:A
9 5bv9:A 701 17 0.1356 0.0114 0.4706 2.2 5cvy:A, 5vma:A
10 7kw6:A 697 16 0.1186 0.0100 0.4375 3.1
11 8do8:B 192 25 0.2034 0.0625 0.4800 3.3 5c50:B, 8do8:D
12 2ff0:A 102 20 0.1525 0.0882 0.4500 4.5 2a66:A, 5l0m:A, 8pki:K
13 2aqc:A 63 23 0.1864 0.1746 0.4783 4.6 2apo:B
14 2pve:A 52 18 0.1525 0.1731 0.5000 5.2 2pve:B, 2pve:C
15 2aus:D 53 23 0.1695 0.1887 0.4348 5.3 2aus:B, 2ey4:E, 2ey4:F, 3hax:C, 3hay:C, 3hjw:B, 2hvy:C, 3lwo:B, 3lwp:B, 3lwq:B, 3lwr:B, 3lwv:B, 2rfk:B
16 8ab0:D 157 17 0.1356 0.0510 0.4706 5.5 8bpr:D
17 6hip:A 104 38 0.2034 0.1154 0.3158 5.7 6hip:B, 5lso:A, 5lso:B, 2peh:A, 2peh:B
18 6z2w:E 2325 34 0.2373 0.0060 0.4118 5.9 6z2w:F, 6z2x:E, 6z2x:F, 6z3a:F, 6z3a:E
19 6knb:B 1120 24 0.1186 0.0063 0.2917 7.9 6knc:B
20 5ztb:B 311 19 0.1186 0.0225 0.3684 8.2 5b4e:A, 5b4f:A, 5gha:A, 5gha:D, 5gha:B, 5gha:C, 5ztb:A, 5ztb:C
21 5y9e:E 420 27 0.1864 0.0262 0.4074 9.4 5y9e:A, 5y9e:B, 5y9e:C, 5y9e:D
22 8xmc:B 1082 21 0.1525 0.0083 0.4286 9.9 7eu1:B, 8xmb:B
23 8xmd:B 1061 21 0.1525 0.0085 0.4286 10.0 7eu0:B, 8hyj:B, 8xme:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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