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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWCYDDATKTFTVTE

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2i2y:A 150 56 0.9821 0.3667 0.9821 8.97e-34 9asq:H, 5bmg:A, 5bmg:B, 5bmg:H, 5bmg:D, 5bmg:E, 5bmg:F, 5bmg:G, 5bmh:A, 3v3x:C, 3v3x:D
2 6nl8:A 56 56 0.8750 0.8750 0.8750 4.79e-29 6nla:A
3 5o94:A 56 56 0.8214 0.8214 0.8214 3.82e-28 5ofs:A, 5ofs:B, 5ofs:C, 5ofs:D
4 7rxc:B 439 54 0.8393 0.1071 0.8704 2.19e-26 7rxd:B
5 5lde:B 225 53 0.7679 0.1911 0.8113 1.07e-20 5lde:A
6 6nl6:B 56 56 0.7500 0.7500 0.7500 5.20e-19 6nl6:C, 6nl6:D, 6nl7:B
7 8jxr:C 341 54 0.5893 0.0968 0.6111 2.13e-11
8 8khn:A 287 33 0.2143 0.0418 0.3636 0.59 8kho:A
9 7nrr:AAA 329 32 0.2500 0.0426 0.4375 0.86 7nrr:BBB, 7nsw:AAA, 7nsw:BBB, 7ntd:AAA, 7ntd:BBB, 7nte:A, 7nte:B
10 6dft:F 321 23 0.1607 0.0280 0.3913 2.4 6dft:B, 6dft:D, 6dft:H, 6dft:J, 6dft:L
11 8sxg:A 366 17 0.1607 0.0246 0.5294 6.6 8sxe:A, 8sxe:B, 8sxf:A, 8sxh:A, 8sxh:E, 8sxh:I
12 1wnb:A 474 21 0.1607 0.0190 0.4286 6.7 1wnb:B, 1wnb:C, 1wnb:D, 1wnd:A, 1wnd:B, 1wnd:C, 1wnd:D
13 7esn:A 435 32 0.2143 0.0276 0.3750 8.7 7esk:A, 7esm:A, 8i4d:A, 7yqs:A
14 5mcp:F 342 35 0.2143 0.0351 0.3429 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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