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BioLiP
>protein
MQRGNFRNQRKIIKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQAN

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6rwg:A 157 55 0.9091 0.3185 0.9091 4.00e-34 1a1t:A, 1aaf:A, 1bj6:A, 2buo:A, 1esk:A, 2exf:A, 1f6u:A, 5i1r:A, 2jzw:A, 2l4l:A, 2m3z:A, 1mfs:A, 1q3y:A, 1q3z:A, 7r7p:I, 7r7p:L
2 2ec7:A 49 48 0.6000 0.6735 0.6875 6.56e-20
3 2a51:A 39 39 0.3636 0.5128 0.5128 1.47e-10
4 2bl6:A 37 35 0.3273 0.4865 0.5143 8.98e-07
5 2bl6:A 37 28 0.2000 0.2973 0.3929 5.1
6 7c4c:A 332 46 0.3455 0.0572 0.4130 2.11e-05 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
7 7c4c:A 332 41 0.2364 0.0392 0.3171 0.10 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
8 7c4c:A 332 47 0.2545 0.0422 0.2979 0.69 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
9 7c4c:A 332 19 0.1455 0.0241 0.4211 9.9 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
10 5w0n:A 379 23 0.2545 0.0369 0.6087 0.003 5w0m:A, 5w0m:C, 5w0n:B
11 5w0b:A 334 20 0.2364 0.0389 0.6500 0.007
12 7s7b:F 352 14 0.1818 0.0284 0.7143 0.040 7s7b:B, 7s7c:B
13 7s7b:F 352 17 0.1818 0.0284 0.5882 0.13 7s7b:B, 7s7c:B
14 2ihx:A 50 43 0.2909 0.3200 0.3721 0.14
15 6bk8:O 229 28 0.2364 0.0568 0.4643 0.26
16 6bk8:O 229 17 0.1636 0.0393 0.5294 1.4
17 2li8:A 63 38 0.2364 0.2063 0.3421 0.32
18 5udz:A 139 38 0.2364 0.0935 0.3421 0.44 8ops:B, 8opt:B, 8ost:B, 3trz:A, 3trz:B, 3trz:C, 3trz:D, 3trz:E, 3trz:F, 3ts0:A, 3ts0:B, 3ts2:A, 3ts2:B, 5udz:B
19 7od9:B 129 24 0.1636 0.0698 0.3750 0.45 6ekg:Y, 6ekh:Y, 7od9:A
20 2ysa:A 55 14 0.1818 0.1818 0.7143 0.48
21 2ysa:A 55 14 0.1455 0.1455 0.5714 1.2
22 2cqf:A 63 38 0.2364 0.2063 0.3421 0.48
23 9fmd:U 295 21 0.2000 0.0373 0.5238 0.80 8c6j:h, 6icz:Z, 6qdv:c, 7w5a:1, 7w5b:1, 5xjc:Z
24 3nyb:B 64 21 0.1636 0.1406 0.4286 0.88
25 6exn:c 204 17 0.1636 0.0441 0.5294 1.4
26 6exn:c 204 28 0.2182 0.0588 0.4286 1.9
27 6lum:A 539 25 0.1455 0.0148 0.3200 1.5 6lum:J, 6lum:P
28 8opp:A 670 16 0.1636 0.0134 0.5625 1.8
29 8opp:A 670 22 0.1273 0.0104 0.3182 6.8
30 8opt:A 783 16 0.1636 0.0115 0.5625 1.8 8ops:A, 5w0m:B, 5w0n:C, 5w0o:A, 5w0o:B
31 8opt:A 783 28 0.1636 0.0115 0.3214 2.7 8ops:A, 5w0m:B, 5w0n:C, 5w0o:A, 5w0o:B
32 3zt9:A 192 26 0.1636 0.0469 0.3462 2.6
33 2lli:A 124 18 0.1455 0.0645 0.4444 4.5
34 7b9v:c 37 17 0.1636 0.2432 0.5294 4.5
35 4f3x:A 476 26 0.1636 0.0189 0.3462 6.2 4f3x:B, 4f3x:C, 4f3x:D
36 8oki:B 1101 28 0.2182 0.0109 0.4286 10.0 8cro:B, 8orq:B, 8p2i:B, 8rbo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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