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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MQMPRRFNTYCPHCNEHQEHEVEKVRSGRQTGMKWIDRQRERNSGIGNDGKFSKVPGGDKPTKKTDLKYRCGECGKAHLR
EGWRAGRLEFQE

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3cc2:3 92 92 1.0000 1.0000 1.0000 2.34e-66 3cc4:3, 3cc7:3, 3cce:3, 3ccj:3, 3ccl:3, 3ccm:3, 3ccq:3, 3ccr:3, 3ccs:3, 3ccu:3, 3ccv:3, 3cd6:3, 3cma:3, 3cme:3, 3cpw:2, 3cxc:2, 1ffk:Z, 3g4s:3, 3g6e:3, 3g71:3, 3i55:3, 3i56:3, 1jj2:2, 1k73:4, 1k8a:4, 1k9m:4, 1kc8:4, 1kd1:4, 1kqs:2, 1m1k:4, 1m90:4, 1n8r:4, 1nji:4, 2otj:3, 2otl:3, 3ow2:2, 1q7y:4, 1q81:4, 1q82:4, 1q86:4, 2qa4:3, 2qex:3, 1qvf:2, 1qvg:2, 1s72:3, 4v9f:3, 1vq4:3, 1vq5:3, 1vq6:3, 1vq7:3, 1vq8:3, 1vq9:3, 1vqk:3, 1vql:3, 1vqm:3, 1vqn:3, 1vqo:3, 1vqp:3, 1w2b:2, 1yhq:3, 1yi2:3, 1yij:3, 1yit:3, 1yj9:3, 1yjn:3, 1yjw:3
2 4v4n:Aj 94 94 0.4022 0.3936 0.3936 7.28e-15 6skf:Bl, 6skg:Bl, 6th6:Bl, 4v6u:Bj
3 8hku:L44E 92 93 0.3478 0.3478 0.3441 6.34e-11 8hkv:L44E, 8hky:L44E, 8hkz:L44E, 8hl1:L44E, 8hl2:L44E, 8hl3:L44E, 8hl4:L44E, 8hl5:L44E
4 6zu5:LOO 91 91 0.2935 0.2967 0.2967 2.84e-05
5 8p5d:LOO 100 91 0.2935 0.2700 0.2967 3.56e-04 8p60:LOO, 8p60:KOO, 7qca:LOO
6 5xxb:n 97 95 0.3152 0.2990 0.3053 4.91e-04
7 6rm3:LOO 98 86 0.2717 0.2551 0.2907 7.14e-04
8 4d5y:o 106 76 0.2609 0.2264 0.3158 0.037 7a01:F2, 8a3d:i, 5aj0:Ao, 8b5l:o, 8b6c:o, 9bdl:AL42, 9bdn:AL42, 9bdp:AL42, 7bhp:Lo, 8bhf:b1, 8bpo:n2, 8btk:Bo, 7cpu:Lo, 7cpv:Lo, 4d67:o, 6d90:o, 6d9j:o, 9f1b:Bo, 9f1c:Bo, 9f1d:Bo, 7f5s:Lo, 8fl6:LV, 8fl7:LV, 8fl9:LV, 8fla:LV, 8flb:LV, 8flc:LV, 8fld:LV, 8fle:LV, 8flf:LV, 6frk:o, 6ftg:o, 6fti:o, 6ftj:o, 8g5y:Lo, 8g5z:Lo, 8g60:Lo, 8g61:Lo, 8g6j:Lo, 8glp:Lo, 6gz3:Ao, 6gz4:Ao, 6gz5:Ao, 6hcf:o3, 6hcj:o3, 6hcm:o3, 6hcq:o3, 8idt:W, 8idy:W, 8ifd:2i, 8ife:2i, 8ine:W, 8inf:W, 6ip5:2i, 6ip6:2i, 6ip8:2i, 3j7o:o, 3j7p:o, 3j7q:o, 3j7r:o, 3j92:o, 3jag:o, 3jah:o, 3jai:o, 3jaj:o, 3jan:o, 8jdj:t, 8jdk:t, 8jdl:t, 8jdm:t, 8k2c:Lo, 5lks:Lo, 6lqm:W, 6lsr:W, 6lss:W, 7ls1:i2, 7ls2:i2, 6lu8:W, 5lzs:o, 5lzt:o, 5lzu:o, 5lzv:o, 5lzw:o, 5lzx:o, 5lzy:o, 5lzz:o, 7mdz:o, 6mtb:o, 6mtc:o, 6mtd:o, 6mte:o, 7nfx:o, 7nwg:o3, 7nwh:o, 7nwi:o, 7o7y:Bo, 7o7z:Bo, 7o80:Bo, 7o81:Bo, 7obr:o, 8ohd:Lo, 8oj0:Lo, 8oj5:Lo, 8oj8:Lo, 6ole:p, 6olf:p, 6olg:Ao, 6oli:p, 6olz:Ao, 6om0:p, 6om7:p, 7ow7:i, 7oya:o1, 7oyb:o1, 7oyc:o1, 7oyd:o, 8p2k:Bo, 6p5i:Ao, 6p5j:Ao, 6p5k:Ao, 6p5n:Ao, 8q7z:Bo, 8q87:Bo, 8qfd:o, 7qgg:p, 8qoi:Lo, 7qvp:Lo, 7qvp:Mo, 7qwq:o, 7qwr:o, 7qws:o, 6qzp:Lo, 6r5q:o, 6r6g:o, 6r6p:o, 6r7q:o, 8rjb:o, 8rjc:o, 8rjd:o, 8scb:o, 6sgc:o2, 6swa:m, 5t2c:i, 6t59:o3, 7tm3:o, 7toq:AL42, 7tor:AL42, 7tut:o, 7ucj:o, 7uck:o, 4ug0:Lo, 4ujc:Bo, 4ujd:Ao, 4uje:Co, 4v5z:B4, 4v6x:Co, 6w6l:p, 6xa1:Lo, 7xnx:Lo, 7xny:Lo, 8xsx:Lo, 8xsy:Lo, 8xsz:Lo, 6y0g:Lo, 8y0w:Lo, 8y0x:Lo, 6y2l:Lo, 6y57:Lo, 6y6x:Lo, 8yoo:Lo, 8yop:Lo, 6z6l:Lo, 6z6m:Lo, 6z6n:Lo, 7zjw:Lq, 7zjx:Lq, 6zm7:Lo, 6zme:Lo, 6zmi:Lo, 6zmo:Lo, 6zvk:F2
9 4v8p:AC 103 31 0.1087 0.0971 0.3226 0.053 4v8p:DC, 4v8p:FC, 4v8p:HC
10 9bh5:Co 102 78 0.2609 0.2353 0.3077 0.15 9cai:Co
11 4v6w:Co 104 77 0.2391 0.2115 0.2857 0.16 6xu6:Co, 6xu7:Co, 6xu8:Co
12 7qep:P2 97 91 0.2500 0.2371 0.2527 0.21
13 5hvq:C 236 15 0.0978 0.0381 0.6000 1.4 5wy5:A
14 2ct0:A 74 22 0.1196 0.1486 0.5000 2.3
15 8c3a:AH 112 34 0.1413 0.1161 0.3824 4.7 8c3a:CB, 8cq7:AH, 8cq7:CB, 8cqw:AH, 8cqw:CB, 8cre:AH, 8cre:CB, 8oeq:AH, 8oeq:CB, 7pzy:AH, 7q08:AH, 7q0f:AH, 7q0p:AH, 7q0r:AH, 8q5i:AH
16 2yrj:A 46 9 0.0978 0.1957 1.0000 5.0
17 7r2g:B 351 10 0.0761 0.0199 0.7000 5.5 6cpm:C, 6cpm:D, 6crn:A, 6crn:B, 6crn:C, 6crn:D, 6gh9:A, 6gha:A, 6ml1:A, 6ml1:B, 7r2g:A
18 4s2r:P 615 34 0.1413 0.0211 0.3824 5.9 4s2r:Q, 4s2t:P, 4s2t:Q
19 7lui:A 180 12 0.0761 0.0389 0.5833 8.3
20 2ndo:A 189 35 0.1196 0.0582 0.3143 8.7 6bqx:A, 6br4:A, 6br4:B, 8cxd:A, 8cxd:B, 8czm:A, 8czm:B, 8czn:A, 8czn:B, 8d10:A, 8d10:B, 8d11:A, 8d11:B, 8d12:A, 8d12:B, 8dg1:B, 8dg2:B, 3dks:B, 3dks:C, 3dks:A, 3dks:D, 8dn0:A, 8dn0:B, 8eoc:B, 8eqo:B, 7l76:A, 7l76:B, 7l7c:A, 7l7c:B, 7lhp:A, 7lhp:B, 7lsm:A, 6pbi:A, 6pc9:A, 6pd7:A, 6pdh:A, 6pg1:A, 6pg1:B, 6pg2:A, 6pg2:B, 6pgj:A, 6pgj:B, 6piq:A, 6piq:B, 6pli:A, 6pli:B, 6pmf:A, 6pmf:B, 6pml:A, 6pml:B, 6poh:A, 6poh:B, 6poi:A, 6poi:B, 6poq:A, 6poq:B, 6pvy:A, 6pvy:B, 6pvz:A, 6pvz:B, 7s1c:A, 7s1c:B, 7s1d:A, 7s1d:B, 7s1f:A, 7s1f:B, 7s1l:A, 7s1l:B, 4tky:B, 4tky:A, 4tky:C, 4tky:D, 7ttv:A, 7ttv:B, 8u1y:A, 8u1y:B, 8u59:A, 8u59:B, 8ubq:A, 8ubq:B, 4wet:A, 4wey:A, 4wf4:B, 4wf5:A, 4wf5:B, 6whd:A, 6whd:B, 6xsp:A, 6xsp:B, 6xsq:A, 6xsq:B, 6xt3:A, 6xt3:B, 4zij:A, 4zij:B
21 7n3m:AAA 437 19 0.0978 0.0206 0.4737 8.9 4enh:A, 4fia:A, 4j14:A, 7lrl:A, 7ls3:A, 7ls4:A, 3mdm:A, 3mdr:A, 3mdr:B, 3mdt:A, 3mdt:B, 3mdv:A, 3mdv:B, 7n3l:A, 7n6f:A, 2q9f:A, 2q9g:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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