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BioLiP
>protein
MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5bps:B 75 74 0.9867 0.9867 1.0000 9.18e-46 5bps:C, 5bps:A, 5bps:D, 5bps:E, 5bps:K, 5bps:L, 5bps:M, 5bps:N, 5bps:O, 5bq6:A, 5bq6:B, 5bq6:C, 5bq6:E, 5bq6:K, 5bq6:L, 5bq6:M, 5bq6:O, 5bqa:A, 5bqa:B, 5bqa:D, 5bqa:E, 5bqa:K, 5bqa:L, 5bqa:M, 5bqa:N, 5bqa:O, 5bqj:B, 5bqj:C, 5bqj:A, 5bqj:D, 5bqj:E, 5bqj:K, 5bqj:L, 5bqj:M, 5bqj:O, 6cp5:O, 6cp5:P, 4f4s:B, 4f4s:C, 4f4s:A, 4f4s:D, 4f4s:E, 4f4s:K, 4f4s:L, 4f4s:M, 4f4s:N, 4f4s:O, 3u32:L, 3u32:M, 3u32:O
2 8khf:4 75 69 0.6000 0.6000 0.6522 1.94e-25 8ki3:4, 8ki3:5, 6tt7:3, 6tt7:4
3 8aph:P1 78 67 0.4267 0.4103 0.4776 3.20e-16 8apj:P1
4 3zk1:A 89 72 0.3200 0.2697 0.3333 2.98e-09 3zk1:B, 3zk1:D, 3zk1:G, 3zk1:H, 3zk1:J, 3zk1:N, 3zk1:O, 3zk1:P, 3zk1:R, 3zk1:S, 3zk1:U, 3zk2:A, 3zk2:C, 3zk2:E, 3zk2:H, 3zk2:I, 3zk2:K, 3zk2:M, 3zk2:N, 3zk2:O, 3zk2:P, 3zk2:L
5 4cbj:B 69 43 0.2000 0.2174 0.3488 5.98e-04 4cbj:C, 4cbj:F, 4cbj:J, 4cbj:L, 4cbj:M, 4cbk:F, 4cbk:G, 4cbk:J, 4cbk:L, 2x2v:D, 2x2v:F, 2x2v:G, 2x2v:H, 2x2v:J, 2x2v:M
6 2wie:A 82 58 0.2267 0.2073 0.2931 0.011 2wie:B, 2wie:C, 2wie:D, 2wie:E, 2xqs:D, 2xqt:A, 2xqt:B, 2xqt:C, 2xqt:D, 2xqt:E, 2xqu:A, 2xqu:B, 2xqu:C, 2xqu:D, 2xqu:E
7 3qr0:A 781 23 0.1067 0.0102 0.3478 2.3 3qr1:A, 3qr1:D
8 6q45:F 462 36 0.2000 0.0325 0.4167 4.7 6q45:D, 6q45:L, 6q45:N
9 1jwy:A 1039 40 0.1867 0.0135 0.3500 8.0 4ae3:A, 2aka:A, 7b19:A, 7b1a:A, 3bz7:A, 3bz8:A, 3bz9:A, 1d0x:A, 1d0y:A, 1d0z:A, 1d1a:A, 1d1b:A, 1d1c:A, 1fmw:A, 2jhr:A, 2jj9:A, 1jx2:A, 1lvk:A, 3mjx:A, 3mkd:A, 1mma:A, 1mmd:A, 1mmg:A, 1mmn:A, 1mne:A, 3mnq:A, 3myh:X, 3myk:X, 3myl:X, 4pjk:A, 1vom:A, 1w9i:A, 1w9j:A, 1w9k:A, 1w9l:A, 2x9h:A, 2xel:A, 2xo8:A, 2y8i:X, 1yv3:A, 6z2s:A, 6z7t:A, 6z7t:B, 6z7u:A
10 1fx8:A 254 53 0.1867 0.0551 0.2642 9.2
11 8j0s:D 469 30 0.1467 0.0235 0.3667 9.8 6foc:F, 6foc:D, 6foc:E, 8g08:F, 8g08:D, 8g09:D, 8g0a:E, 8g0a:F, 8g0c:F, 8g0d:D, 8g0d:E, 8g0e:E, 8g0e:F, 8j0s:F, 8j0t:D, 8j0t:F, 7jg5:F, 7jga:E, 8jr0:D, 8jr0:F, 7njk:D, 7njk:E, 7njk:F, 7njl:D, 7njl:E, 7njl:F, 7njm:D, 7njm:E, 7njm:F, 7njn:D, 7njn:E, 7njn:F, 7njo:D, 7njo:E, 7njo:F, 7njp:D, 7njp:E, 7njp:F, 7njq:D, 7njq:E, 7njq:F, 7njr:D, 7njr:E, 7njr:F, 7njs:D, 7njs:E, 7njs:F, 7nk7:D, 7nk7:E, 7nk7:F, 7nkh:D, 7nkh:E, 7nkh:F, 7nkj:D, 7nkj:E, 7nkj:F, 7y5a:D, 7y5a:F, 7y5b:D, 7y5b:E, 7y5b:F, 7y5c:D, 7y5c:E, 7y5c:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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