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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MQKLTVGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATTDHQVTLVDLPGTYSLTTILDEQIACHYILSGD
ADMLINVVDASNLERNLYLTLQLLELGIPCVVALNMLDIAEKQQVRIDIDALAARLGCPVIPLVSTRGRGIEALKIALDR
HQANSDLELVHYPQPLLREADLLAQQMSAQIPPRQRRWLGLQMLEGDIYSRAYAGDAADKLDIALANLSDEIDDPALHIA
DARYQTIAAICDAVSNT

The query sequence (length=257) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2wib:A 261 261 0.9961 0.9808 0.9808 0.0 2wib:B, 2wic:A
2 3i8x:B 261 261 0.8444 0.8314 0.8314 2.97e-152 3hyt:A, 3hyt:B, 3hyt:C, 3i8x:A, 3i8x:C, 4r98:A, 4r98:B
3 2wjg:A 170 159 0.3113 0.4706 0.5031 1.07e-50 2wjg:B, 2wjh:A, 2wjh:B, 2wji:A, 2wji:B, 2wjj:A, 2wjj:B
4 3b1v:A 264 260 0.3774 0.3674 0.3731 1.96e-49 3b1w:A, 3b1w:B, 3b1w:C, 3b1w:D, 3b1x:A, 3b1x:B, 3b1y:A, 7bvu:A, 7bvu:B, 7bwv:A, 7bwv:B, 3lx5:A, 3lx8:A, 4non:A, 4non:B, 3ss8:A, 3ss8:B, 3tah:A, 3tah:B
5 3a1s:A 255 240 0.3541 0.3569 0.3792 5.80e-45 3a1s:B, 3a1t:A, 3a1u:A, 3a1u:B
6 3w5j:A 194 175 0.2412 0.3196 0.3543 5.95e-28
7 3ieu:A 293 211 0.1907 0.1672 0.2322 2.61e-08 3ieu:B
8 6yxx:EA 532 165 0.1673 0.0808 0.2606 3.21e-08 7aoi:XL, 6yxy:EA
9 5dn8:A 405 132 0.1556 0.0988 0.3030 1.49e-07
10 5dn8:A 405 152 0.1673 0.1062 0.2829 2.47e-05
11 2cxx:A 184 180 0.2101 0.2935 0.3000 4.28e-07 2cxx:B, 2cxx:C
12 2e87:A 356 160 0.1518 0.1096 0.2437 4.99e-06
13 7o9k:G 337 170 0.1790 0.1365 0.2706 8.40e-06 7of5:x, 7of7:x
14 3kxi:A 326 167 0.1868 0.1472 0.2874 2.66e-05 2qth:A
15 1wf3:A 296 89 0.1051 0.0912 0.3034 5.93e-05
16 5ady:6 426 146 0.1595 0.0962 0.2808 9.22e-05 8g31:6, 8g34:6, 8g38:6, 7yla:6
17 1lnz:A 342 166 0.1634 0.1228 0.2530 9.60e-05 1lnz:B
18 7am2:BU 463 161 0.1595 0.0886 0.2547 1.12e-04
19 7am2:BU 463 124 0.1284 0.0713 0.2661 0.31
20 7oi6:y 331 190 0.1790 0.1390 0.2421 1.29e-04 8pk0:t
21 2dby:A 355 49 0.0739 0.0535 0.3878 2.47e-04
22 7rr5:R 355 55 0.0661 0.0479 0.3091 4.95e-04
23 3iev:A 302 125 0.1284 0.1093 0.2640 7.01e-04 7c1o:A, 3r9w:A, 3r9x:A
24 7odt:t 316 179 0.1868 0.1519 0.2682 0.002
25 8kie:y 363 46 0.0700 0.0496 0.3913 0.003
26 8pv1:Cd 462 58 0.0817 0.0455 0.3621 0.003 8pv2:Cd, 8pv3:Cd, 8pv4:Cd, 8pv5:Cd, 8pv6:Cd, 8pv7:Cd, 8pv8:Cd, 8pvk:Cd, 8pvl:Cd
27 6xrs:B 392 44 0.0778 0.0510 0.4545 0.004 6xrs:A, 6xrs:D, 6xrs:C
28 6xrs:B 392 192 0.1946 0.1276 0.2604 0.067 6xrs:A, 6xrs:D, 6xrs:C
29 5m7h:A 420 179 0.1790 0.1095 0.2570 0.004 4dcs:A, 4dct:A, 4dcu:A, 2hjg:A, 5mbs:A, 5x4b:A, 5x4b:B
30 1xzq:A 449 160 0.1634 0.0935 0.2625 0.006 1xzq:B
31 6g0z:A 290 72 0.0934 0.0828 0.3333 0.006 6g0z:B, 6g12:A, 6g12:B, 6g14:B, 6g14:A, 6g15:A, 6g15:B
32 2dyk:A 150 157 0.1673 0.2867 0.2739 0.007 2dyk:B
33 8kab:h 430 92 0.1284 0.0767 0.3587 0.007
34 8fl2:NC 511 58 0.0778 0.0391 0.3448 0.009 8fkz:NC, 8fl0:NC, 8fl3:NC, 8fl4:NC, 8idt:A, 8idy:A, 8ie3:A, 8ine:A, 8inf:A, 8ink:w, 8ipd:w, 8ipx:w, 8ipy:w, 8ir1:w, 8ir3:w
35 3cnl:A 233 116 0.1089 0.1202 0.2414 0.009 3cnn:A, 3cno:A
36 7siq:A 524 177 0.1829 0.0897 0.2655 0.009
37 7of4:C 422 171 0.1829 0.1114 0.2749 0.010 7of2:C, 7of6:C
38 7of1:m 229 57 0.0739 0.0830 0.3333 0.012
39 6n8j:m 378 57 0.0739 0.0503 0.3333 0.012
40 7btb:m 469 58 0.0739 0.0405 0.3276 0.012 7bt6:m, 6ft6:m, 3jct:m, 6m62:m, 7oh3:m, 7ohq:m, 7oht:m, 7ug6:m, 7uoo:m, 7uqb:m, 7uqz:m, 7uui:m, 7v08:m, 6ylg:m, 6ylh:m
41 7y9i:A 362 40 0.0661 0.0470 0.4250 0.013
42 3j8g:X 418 152 0.1556 0.0957 0.2632 0.014
43 3j8g:X 418 148 0.1556 0.0957 0.2703 0.23
44 7unv:x 593 156 0.1401 0.0607 0.2308 0.014 7unq:x, 7unr:x, 7unt:x, 7unu:x, 7unw:x
45 8uua:v 418 136 0.1479 0.0909 0.2794 0.017 8a57:D, 8uu7:v, 8uu8:v, 8uu9:v
46 7nrc:So 347 54 0.0623 0.0461 0.2963 0.018
47 8csq:a 263 56 0.0817 0.0798 0.3750 0.026
48 7pua:IA 704 162 0.1673 0.0611 0.2654 0.057 7pub:IA
49 2lkd:A 178 126 0.1167 0.1685 0.2381 0.081
50 5izm:B 495 179 0.1984 0.1030 0.2849 0.096 5izk:A, 5izm:A
51 7bl2:9P1 338 55 0.0623 0.0473 0.2909 0.14 7bl3:9P, 7bl4:9, 7bl5:9, 7bl6:9, 4csu:9, 5m04:A
52 3vr1:A 516 95 0.1089 0.0543 0.2947 0.18 3vqt:A, 3vqt:B, 3vqt:C, 3vqt:D, 3vr1:B, 3vr1:C, 3vr1:D
53 1mky:A 407 36 0.0623 0.0393 0.4444 0.21
54 1mky:A 407 20 0.0389 0.0246 0.5000 2.9
55 1puj:A 261 85 0.0973 0.0958 0.2941 0.23 6ppk:W
56 7zjw:E 519 167 0.1790 0.0886 0.2754 0.24 5izl:A, 5izl:B
57 3j9y:w 639 136 0.1440 0.0579 0.2721 0.26 5kcs:1w
58 5t62:W 306 64 0.0817 0.0686 0.3281 0.26
59 8i9w:CL 397 102 0.1089 0.0705 0.2745 0.27 8i9t:CL, 8i9v:CL, 8i9x:CL, 8i9y:CL, 8i9z:CL, 8ia0:CL, 8pv1:CL, 8pv2:CL, 8pv3:CL, 8pv4:CL, 8pv5:CL, 8pv6:CL, 8pv7:CL, 8pv8:CL, 8pvk:CL, 8pvl:CL
60 6n8n:W 377 57 0.0778 0.0531 0.3509 0.31 6n8o:W
61 2ohf:A 327 21 0.0467 0.0367 0.5714 0.32
62 6qtz:o 325 25 0.0428 0.0338 0.4400 0.34 6qik:o, 6ri5:o, 6rzz:o, 6s05:o
63 2h57:B 167 94 0.0973 0.1497 0.2660 0.36 2h57:A, 2h57:C, 6vbv:3
64 5ee3:B 364 40 0.0545 0.0385 0.3500 0.37 5ee3:A, 5ee9:A
65 4ac9:C 471 171 0.1518 0.0828 0.2281 0.37 4ac9:A, 4ac9:B, 4aca:B, 4aca:C, 4acb:A, 4acb:B, 4acb:C
66 4v6v:A1 639 137 0.1479 0.0595 0.2774 0.40
67 6lsr:1 247 31 0.0467 0.0486 0.3871 0.64
68 3izy:P 537 136 0.1128 0.0540 0.2132 0.64
69 7es1:A 408 60 0.0700 0.0441 0.3000 0.67 7erx:A, 7es0:A, 7es2:A
70 8fkt:NB 387 56 0.0739 0.0491 0.3393 0.69 8fkp:NB, 8fku:NB, 8fkv:NB, 8fkw:NB, 8fkx:NB, 8fky:NB, 8fkz:NB, 8fl0:NB, 8ink:u, 8ipd:u, 8ipx:u, 8ipy:u
71 3tr5:A 518 82 0.0934 0.0463 0.2927 0.75 3tr5:B, 3tr5:C, 3tr5:D
72 5di3:B 204 107 0.0973 0.1225 0.2336 0.76 4m9q:A, 4m9q:B, 4m9q:C
73 2nzj:B 160 143 0.1323 0.2125 0.2378 0.90 2nzj:A, 2nzj:C, 2nzj:D
74 5lmv:a 502 61 0.0778 0.0398 0.3279 0.99
75 5izk:B 451 167 0.1829 0.1042 0.2814 1.1
76 7c3k:B 389 56 0.0700 0.0463 0.3214 1.1 7c3k:A, 8jqz:A, 8jqz:B
77 8eti:b 391 55 0.0661 0.0435 0.3091 1.3 8esr:b, 8etg:b
78 8etc:b 415 55 0.0661 0.0410 0.3091 1.3 8esq:b, 8etj:b
79 2dy1:A 660 31 0.0623 0.0242 0.5161 1.4 1wdt:A
80 1pg8:A 398 52 0.0739 0.0477 0.3654 1.4 7f1u:A, 7f1u:B, 7f1u:C, 7f1u:D, 7f1v:A, 7f1v:B, 7f1v:C, 7f1v:D, 1pg8:C, 1pg8:B, 1pg8:D, 3vk3:A, 3vk3:B, 3vk3:C, 3vk3:D, 5x2w:A, 5x2w:B, 5x2w:C, 5x2w:D, 5x2x:A, 5x2x:B, 5x2x:C, 5x2x:D, 5x2z:A, 5x2z:B, 5x2z:C, 5x2z:D, 5x30:A, 5x30:B, 5x30:C, 5x30:D
81 6uz7:1 600 131 0.1206 0.0517 0.2366 1.5 4v8y:CP
82 7pd3:z 311 58 0.0778 0.0643 0.3448 1.6 8pk0:z, 8qsj:z
83 2awn:A 330 114 0.1323 0.1030 0.2982 1.8
84 2awn:D 301 114 0.1323 0.1130 0.2982 1.9 2awo:D
85 2awn:B 374 114 0.1323 0.0909 0.2982 2.1 2awo:A, 2awo:B, 2awo:C, 4ki0:A, 4ki0:B, 3puv:A, 3puv:B, 3puw:A, 3puw:B, 3pux:A, 3pux:B, 3puy:A, 3puy:B, 3puz:A, 3puz:B, 1q12:A, 1q12:B, 1q12:C, 1q12:D, 2r6g:A, 2r6g:B, 3rlf:A, 3rlf:B
86 2awn:C 344 114 0.1323 0.0988 0.2982 2.3
87 7ueh:G 473 80 0.0973 0.0529 0.3125 2.7 7ueh:A, 7ueh:B, 7ueh:H, 7ueh:C, 7ueh:D
88 9ax8:z 509 61 0.0584 0.0295 0.2459 2.9 3jcj:f, 3jcn:b, 5me0:W, 5me1:W, 6o7k:f, 6o9k:z
89 6gaw:BC 571 136 0.1051 0.0473 0.1985 3.3 6gaz:BC, 6gb2:BC, 7po2:7, 8qrn:7, 6rw5:7
90 4bas:A 172 90 0.1089 0.1628 0.3111 4.3
91 8fl4:SR 593 239 0.2179 0.0944 0.2343 4.6 8fkr:SR, 8fks:SR
92 5a7y:B 278 26 0.0428 0.0396 0.4231 5.4 5a7y:A
93 6vs4:A 223 131 0.1323 0.1525 0.2595 6.0 6vs4:B
94 4wnr:A 323 122 0.1128 0.0898 0.2377 6.5
95 6no5:A 239 96 0.1051 0.1130 0.2812 6.5 6no0:A, 6no0:B, 6no1:A, 6no2:A, 6no2:B, 6no3:A, 6no3:B, 6no4:A, 6no5:B, 6no5:C, 6no5:D
96 8cub:C 588 28 0.0428 0.0187 0.3929 7.0 8cub:A, 7r8a:A, 7r8b:A
97 6vno:A 1084 23 0.0428 0.0101 0.4783 7.4 6vp6:A
98 7obq:v 201 92 0.0973 0.1244 0.2717 7.8 2fh5:B, 6frk:v, 7nfx:v
99 3geh:A 442 131 0.1089 0.0633 0.2137 8.2
100 8tzh:A 1485 22 0.0428 0.0074 0.5000 8.5 3d6t:B
101 8wm7:C 658 50 0.0739 0.0289 0.3800 9.1 8w9m:C
102 3bk7:A 593 131 0.1284 0.0556 0.2519 9.2 3j15:B, 5lw7:B, 1yqt:A, 5yv5:A
103 3j5s:D 554 23 0.0428 0.0199 0.4783 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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