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BioLiP
>protein
MQINIQGHHIDLTDSMQDYVHSKFDKLERFFDHINHVQVILRVEKLRQIAEATLHVNQAEIHAHADDENMYAAIDSLVDK
LVRQLNKHKEKL

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4hei:A 92 92 1.0000 1.0000 1.0000 1.60e-62 4hei:B
2 6h4n:x 95 92 0.5326 0.5158 0.5326 4.03e-34 6h58:x, 6h58:xx, 4v8h:AX, 4v8h:CX, 6y69:x
3 8rd8:D 105 100 0.4130 0.3619 0.3800 2.75e-17
4 8uu4:w 102 96 0.3804 0.3431 0.3646 4.87e-15 8uu7:w
5 5njt:x 104 95 0.3804 0.3365 0.3684 1.31e-12
6 6cfk:1y 97 85 0.3043 0.2887 0.3294 1.40e-11 6cfk:2y, 6cfl:1y, 6cfl:2y, 8fc1:1y, 8fc1:2y, 8fc2:1y, 8fc2:2y, 8fc3:1y, 8fc3:2y, 8fc4:1y, 8fc4:2y, 8fc5:1y, 8fc5:2y, 8fc6:1y, 8fc6:2y, 5fdu:1x, 5fdu:2x, 5fdv:1x, 5fdv:2x, 6fkr:1z, 6fkr:2z, 7md7:1y, 7md7:2y, 7rqa:1y, 7rqa:2y, 7rqb:1y, 7rqb:2y, 7rqc:1y, 7rqc:2y, 7rqd:1y, 7rqd:2y, 7rqe:1y, 7rqe:2y, 8t8b:1y, 8t8b:2y, 8t8c:1y, 8t8c:2y, 4v4g:Aa, 4v4g:Ca, 4v4g:Ea, 4v4g:Ga, 4v4g:Ia, 4v8i:AY, 4v8i:CY, 5v8i:1y, 5v8i:2y, 8vtw:1y, 8vtw:2y, 8vty:1y, 8vty:2y, 6xhx:1y, 6xhx:2y, 4y4o:1y, 4y4o:2y
7 5myj:A 159 96 0.3152 0.1824 0.3021 8.11e-11
8 6fxc:Av 162 95 0.2826 0.1605 0.2737 4.60e-10 6fxc:Bv, 5nd8:v, 5nd9:v, 5ngm:Av, 6s0x:v, 6s13:v
9 6gzq:V2 121 91 0.3043 0.2314 0.3077 9.75e-09 6gzx:V3, 6gzx:V4, 6gzz:V3, 6gzz:V4
10 6dzi:Y 103 96 0.2826 0.2524 0.2708 4.23e-04 6dzk:Y, 5zep:x
11 5mmj:y 116 102 0.3043 0.2414 0.2745 0.036 6eri:BV, 5mmm:y, 5x8p:y, 5x8r:y
12 2w5z:A 180 50 0.1413 0.0722 0.2600 0.48 5f5e:A, 5f6l:A, 6pwv:C, 6pww:C, 7u5v:A, 6u9k:A, 6u9k:B, 6u9m:A, 6u9m:B, 6u9n:A, 6u9n:B, 6u9r:A, 6u9r:B, 2w5y:A, 7w67:C, 7w6a:C, 7w6i:C, 7w6j:C
13 6kiu:K 179 50 0.1413 0.0726 0.2600 0.57 6kiv:K, 6kix:K, 6kiz:K, 7ud5:K
14 7bre:B 163 50 0.1413 0.0798 0.2600 1.4 7bre:E
15 1jqk:A 610 36 0.1413 0.0213 0.3611 2.4 1jqk:B, 1jqk:C, 1jqk:D, 1jqk:E, 1jqk:F
16 8by5:A 198 54 0.1630 0.0758 0.2778 5.5
17 6zdk:AAA 362 30 0.1087 0.0276 0.3333 5.7 6zdl:AAA, 6zfa:AAA, 6zfn:AAA, 6zj1:AAA, 6zj5:AAA
18 8b9d:4 677 45 0.1522 0.0207 0.3111 8.2 7pfo:4, 7plo:4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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