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BioLiP
>protein
MQFKLILNGKTLKGVITIEAVDHAEAEKFFKQYANDNGVDGEWTYDEATHTFTVTE

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5o94:A 56 56 1.0000 1.0000 1.0000 1.40e-36 5ofs:A, 5ofs:B, 5ofs:C, 5ofs:D
2 2i2y:A 150 56 0.8393 0.3133 0.8393 3.96e-28 9asq:H, 5bmg:A, 5bmg:B, 5bmg:H, 5bmg:D, 5bmg:E, 5bmg:F, 5bmg:G, 5bmh:A, 3v3x:C, 3v3x:D
3 6nl8:A 56 56 0.7679 0.7679 0.7679 2.01e-24 6nla:A
4 7rxc:B 439 54 0.7143 0.0911 0.7407 5.98e-21 7rxd:B
5 6nl6:B 56 56 0.6786 0.6786 0.6786 1.54e-15 6nl6:C, 6nl6:D, 6nl7:B
6 5lde:B 225 53 0.6429 0.1600 0.6792 2.23e-15 5lde:A
7 8jxr:C 341 55 0.5179 0.0850 0.5273 7.01e-08
8 6dft:F 321 26 0.1786 0.0312 0.3846 1.7 6dft:B, 6dft:D, 6dft:H, 6dft:J, 6dft:L
9 5lz6:A 126 35 0.2321 0.1032 0.3714 2.7 6q67:A, 6q68:A
10 2ddu:A 301 39 0.2500 0.0465 0.3590 4.5
11 6y87:A 470 31 0.1964 0.0234 0.3548 8.2 6y87:B, 6y87:C, 6y87:D, 6y87:E, 6y87:F
12 8hl1:AEFG 725 52 0.3214 0.0248 0.3462 8.6 8hl2:AEFG, 8hl3:AEFG, 8hl4:AEFG

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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