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BioLiP
>protein
MQDRVKRPINAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKA
KMLPK

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2gzk:A 159 75 0.8588 0.4591 0.9733 4.37e-50 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
2 2gzk:A 159 49 0.1765 0.0943 0.3061 0.003 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
3 1gt0:D 79 79 0.6353 0.6835 0.6835 1.78e-36 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
4 6l6y:D 80 76 0.4824 0.5125 0.5395 3.83e-28 4a3n:A, 3f27:D, 6l6y:F
5 6t78:A 77 74 0.4824 0.5325 0.5541 2.18e-26 6t78:B, 3u2b:C
6 4y60:C 76 74 0.4471 0.5000 0.5135 2.47e-25
7 4s2q:D 76 74 0.4471 0.5000 0.5135 6.61e-25 4euw:A
8 2lef:A 86 71 0.2235 0.2209 0.2676 3.44e-07
9 7m5w:A 138 72 0.2588 0.1594 0.3056 6.78e-07 6jrp:A, 6jrp:D, 6jrp:G, 6jrp:J
10 1e7j:A 74 52 0.1882 0.2162 0.3077 1.25e-06 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
11 1j5n:A 93 54 0.2235 0.2043 0.3519 3.66e-06
12 5jh0:D 157 56 0.2471 0.1338 0.3750 4.70e-06 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
13 5jh0:D 157 65 0.1882 0.1019 0.2462 0.052 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
14 6cij:N 133 38 0.1529 0.0977 0.3421 0.012 5zdz:N, 5ze1:N, 5ze2:N
15 6cik:N 90 38 0.1412 0.1333 0.3158 0.020 6cg0:N, 6cim:N
16 6hb4:A 197 53 0.1412 0.0609 0.2264 0.30 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
17 8fn9:A 219 46 0.1647 0.0639 0.3043 0.86 8fn9:C, 8fn9:E, 8fn9:G, 8fna:A
18 5ven:A 382 52 0.2118 0.0471 0.3462 0.89 5ven:B, 5veo:A
19 8fp3:A 331 56 0.2118 0.0544 0.3214 1.3 8fp1:A, 3txo:A
20 3j6b:E 274 26 0.1294 0.0401 0.4231 4.2 5mrc:E, 5mre:E, 5mrf:E
21 9arh:A 802 24 0.1059 0.0112 0.3750 7.0 9are:A, 9are:C, 9arf:A, 9arf:C, 9arh:C, 9bib:A, 9bib:C, 7eot:B, 7eot:D, 7eou:B, 7eou:D, 7eu7:A, 7eu7:C, 7saa:A, 7saa:C, 7sac:A, 7sac:C, 5uow:C, 6whu:A, 6whu:C, 6whv:C, 6why:A, 6why:C, 6wi0:A, 6wi0:C, 7yff:A, 7yff:C, 7yfi:A, 7yfi:C
22 2bei:A 156 34 0.1647 0.0897 0.4118 8.1 2q4v:A
23 3tl1:A 158 35 0.1176 0.0633 0.2857 9.3 3tl1:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417