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BioLiP
>protein
MPVGSLQELAVQKGWRLPEYTVAQFTITCRVETFVETGSGTSKQVAKRVAAEKLLTKFKT

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1di2:B 60 60 1.0000 1.0000 1.0000 9.85e-39
2 1di2:A 69 69 1.0000 0.8696 0.8696 1.53e-35
3 7zpk:C 233 68 0.7000 0.1803 0.6176 3.18e-22 3adl:A, 5n8l:A, 5n8m:A
4 8dfv:K 253 67 0.3833 0.0909 0.3433 6.94e-09 8dg5:K
5 6sdw:A 177 63 0.3500 0.1186 0.3333 9.24e-05 6htu:A, 6htu:B, 6htu:C, 6sdy:A
6 1ekz:A 76 67 0.2833 0.2237 0.2537 0.003
7 7scf:A 321 41 0.2667 0.0498 0.3902 0.13 7scf:B, 7sew:A, 7sex:A, 7sey:A, 7sf4:A, 7sf4:B, 7sf5:A, 7sf5:B
8 1yyk:A 221 60 0.3167 0.0860 0.3167 0.58 2ez6:A, 2ez6:B, 1jfz:A, 1jfz:B, 1jfz:C, 1jfz:D, 4m2z:A, 4m2z:B, 4m30:A, 4m30:B, 2nue:A, 2nuf:A, 2nuf:B, 2nug:A, 2nug:B, 1rc5:A, 1rc5:B, 1rc5:C, 1rc5:D, 1rc7:A, 1yyo:A, 1yyw:A, 1yyw:C, 1yz9:A
9 2l3j:A 236 34 0.2500 0.0636 0.4412 1.4 2l3c:A
10 7r97:A 226 69 0.4000 0.1062 0.3478 2.0 7r97:B
11 4hpp:A 426 28 0.1667 0.0235 0.3571 3.8
12 6gzt:A 267 37 0.1833 0.0412 0.2973 7.1 6fdk:A, 6fdq:A, 6fdq:B, 6fdu:B, 6gzs:A
13 7mq9:LM 2005 52 0.2500 0.0075 0.2885 8.1
14 7mqa:LM 2041 52 0.2500 0.0073 0.2885 8.1
15 4hdq:A 311 21 0.1500 0.0289 0.4286 9.1 6oq3:A, 6oq4:A, 8su8:A, 8t09:A, 8t7v:A, 3u7d:A, 3u7d:C, 6uzk:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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