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BioLiP
>protein
MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAEKLLTKFKT

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1di2:A 69 69 1.0000 1.0000 1.0000 3.44e-46
2 1di2:B 60 69 0.8696 1.0000 0.8696 1.76e-35
3 7zpk:C 233 68 0.6957 0.2060 0.7059 1.27e-30 3adl:A, 5n8l:A, 5n8m:A
4 7zpk:C 233 67 0.3478 0.1030 0.3582 3.6 3adl:A, 5n8l:A, 5n8m:A
5 8dfv:K 253 67 0.4058 0.1107 0.4179 8.25e-15 8dg5:K
6 6sdw:A 177 63 0.3768 0.1469 0.4127 2.13e-10 6htu:A, 6htu:B, 6htu:C, 6sdy:A
7 6sdw:A 177 61 0.3333 0.1299 0.3770 3.33e-07 6htu:A, 6htu:B, 6htu:C, 6sdy:A
8 1ekz:A 76 67 0.3043 0.2763 0.3134 2.35e-09
9 1yyk:A 221 60 0.3333 0.1041 0.3833 2.13e-06 2ez6:A, 2ez6:B, 1jfz:A, 1jfz:B, 1jfz:C, 1jfz:D, 4m2z:A, 4m2z:B, 4m30:A, 4m30:B, 2nue:A, 2nuf:A, 2nuf:B, 2nug:A, 2nug:B, 1rc5:A, 1rc5:B, 1rc5:C, 1rc5:D, 1rc7:A, 1yyo:A, 1yyw:A, 1yyw:C, 1yz9:A
10 7r97:A 226 69 0.3913 0.1195 0.3913 1.06e-04 7r97:B
11 7v6c:B 260 62 0.3043 0.0808 0.3387 1.59e-04
12 2l3j:A 236 49 0.2754 0.0805 0.3878 0.002 2l3c:A
13 2l3j:A 236 46 0.2319 0.0678 0.3478 0.10 2l3c:A
14 7zlq:B 82 39 0.2174 0.1829 0.3846 0.015 7zlq:A
15 7scf:A 321 41 0.2319 0.0498 0.3902 0.089 7scf:B, 7sew:A, 7sex:A, 7sey:A, 7sf4:A, 7sf4:B, 7sf5:A, 7sf5:B
16 5dv7:C 137 46 0.2319 0.1168 0.3478 0.13
17 5b16:A 722 52 0.2464 0.0235 0.3269 0.21
18 3cxl:A 402 50 0.2464 0.0423 0.3400 0.31
19 5ztm:A 168 50 0.2029 0.0833 0.2800 0.33 5ztm:B
20 6lxd:A 918 52 0.2464 0.0185 0.3269 0.41 9asm:A, 9asn:A, 9aso:A, 9asp:A, 9asq:A, 6v5b:A, 6v5c:A
21 8e0f:B 454 38 0.1884 0.0286 0.3421 0.80 6d06:A, 6d06:D, 8e0f:A, 8e4x:A, 8e4x:B, 5ed1:A, 5ed1:D, 5ed2:A, 5ed2:D, 5hp2:A, 5hp2:D, 5hp3:A, 5hp3:D, 7kfn:A, 7kfn:D, 2l2k:B, 6vff:A, 6vff:B, 1zy7:A, 1zy7:B
22 5k6o:A 795 59 0.2754 0.0239 0.3220 2.5 5k6m:A, 5k6n:A
23 6iae:B 148 54 0.2174 0.1014 0.2778 6.4 6ia7:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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