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BioLiP
>protein
MPQVNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEG

The query sequence (length=43) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1bdt:B 53 43 0.9767 0.7925 0.9767 1.38e-25 1bdt:A, 1bdt:C, 1bdt:D, 1bdv:A, 1bdv:B, 1bdv:C, 1bdv:D, 1par:A, 1par:B, 1par:C, 1par:D
2 3qoq:A 50 38 0.3256 0.2800 0.3684 0.037 3qoq:B, 3qoq:C, 3qoq:D
3 6q7i:A 770 21 0.2093 0.0117 0.4286 1.8 6q7j:A, 6q7j:B
4 5d3m:A 280 19 0.2326 0.0357 0.5263 3.2 8bmp:A, 8bmq:A, 8bms:A, 5d3m:E
5 2p5v:G 158 39 0.3488 0.0949 0.3846 3.4 2p5v:A, 2p5v:B, 2p5v:C, 2p5v:E, 2p5v:D, 2p5v:F, 2p5v:H, 2p6s:A, 2p6s:G, 2p6s:B, 2p6s:D, 2p6s:C, 2p6s:F, 2p6s:E, 2p6s:H, 2p6t:A, 2p6t:G, 2p6t:B, 2p6t:D, 2p6t:C, 2p6t:F, 2p6t:E, 2p6t:H
6 2zzd:F 218 36 0.3256 0.0642 0.3889 6.3 2dd5:C, 2dd5:F, 2dd5:I, 2dd5:L, 2dxb:C, 2dxb:F, 2dxb:I, 2dxb:L, 2dxb:O, 2dxb:R, 2dxb:U, 2dxb:X, 2dxc:C, 2dxc:F, 2dxc:I, 2dxc:L, 3vyg:C, 3vyg:F, 3vyg:I, 3vyg:L, 2zzd:C, 2zzd:I, 2zzd:L
7 7wb0:A 797 33 0.2326 0.0125 0.3030 6.5
8 3e78:A 365 22 0.2093 0.0247 0.4091 6.7 3e79:A, 3eki:A
9 1gt0:D 79 24 0.2558 0.1392 0.4583 7.2 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
10 7xtj:B 743 20 0.1860 0.0108 0.4000 8.2 7xtj:A
11 1s4c:B 155 19 0.2558 0.0710 0.5789 8.5 1s4c:A, 1s4c:C, 1s4c:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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