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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MPQLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAK
DAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLL

The query sequence (length=158) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2p5v:G 158 158 1.0000 1.0000 1.0000 8.26e-116 2p5v:A, 2p5v:B, 2p5v:C, 2p5v:E, 2p5v:D, 2p5v:F, 2p5v:H, 2p6s:A, 2p6s:G, 2p6s:B, 2p6s:D, 2p6s:C, 2p6s:F, 2p6s:E, 2p6s:H, 2p6t:A, 2p6t:G, 2p6t:B, 2p6t:D, 2p6t:C, 2p6t:F, 2p6t:E, 2p6t:H
2 2cyy:A 151 152 0.2785 0.2914 0.2895 1.53e-22 2e1c:A, 2zny:A, 2zny:C, 2zny:E, 2zny:B, 2zny:D, 2zny:F, 2zny:H, 2zny:G, 2znz:A, 2znz:B, 2znz:C, 2znz:D, 2znz:E, 2znz:F, 2znz:G, 2znz:H
3 7fby:A 153 141 0.2722 0.2810 0.3050 8.96e-18
4 2e7w:A 150 147 0.2215 0.2333 0.2381 2.73e-15 2e7x:A, 2efp:A, 2efq:A, 2pmh:A, 2pn6:A, 2yx4:A, 2yx7:A
5 2vbw:A 147 105 0.2278 0.2449 0.3429 5.45e-12 2vbx:A, 2vby:A, 2vbz:A, 2vc0:A, 2vc1:A, 2w24:A
6 2cg4:A 149 139 0.2025 0.2148 0.2302 8.72e-10 2cg4:B
7 6yxx:E8 154 73 0.1456 0.1494 0.3151 0.12
8 8q6x:A 389 56 0.1266 0.0514 0.3571 0.29 8q6x:B, 8q6y:A, 8q6y:B
9 8c7u:D 262 52 0.1013 0.0611 0.3077 0.36 8c7u:A, 8c7u:B, 8c7u:C
10 2djw:B 80 66 0.0886 0.1750 0.2121 1.8 2djw:E, 2djw:G, 2djw:J
11 5iwc:A 297 31 0.0759 0.0404 0.3871 1.9 5i6d:A, 5i7a:A, 5i7h:A, 5i7o:A, 5iwc:B
12 3dwg:A 325 31 0.0759 0.0369 0.3871 2.0 3dwg:B, 3dwi:A, 3dwi:B, 5i6d:B, 5i6d:C, 5i6d:D, 5i7a:B, 5i7a:C, 5i7a:D, 5i7h:B, 5i7h:C, 5i7h:D, 5i7o:B, 5i7o:C, 5i7o:D, 5i7r:B, 5i7r:A, 5iw8:A, 5iw8:B
13 1cg0:A 431 45 0.1076 0.0394 0.3778 2.2 1cg1:A, 1cg3:A, 1cg4:A, 1ch8:A, 1cib:A, 2gcq:A, 1gim:A, 1gin:A, 1hon:A, 1hoo:A, 1juy:A, 1kjx:A, 1kkb:A, 1kkf:A, 1ksz:A, 1nht:A, 1qf4:A, 1qf5:A, 1son:A, 1soo:A
14 4un1:B 159 150 0.1962 0.1950 0.2067 2.7 4un1:D
15 8c7s:A 256 65 0.1266 0.0781 0.3077 2.9 8c7s:B, 5ey0:B, 5ey0:A, 5ey1:A, 5ey1:B
16 6e4q:A 505 36 0.0696 0.0218 0.3056 4.3 6e4q:B, 6e4q:C, 6e4q:D
17 5yhx:N 146 30 0.0506 0.0548 0.2667 5.3 5yhx:A, 5yhx:B, 5yhx:G, 5yhx:H, 5yhx:M, 5yhx:S, 5yhx:T, 5yhy:A, 5yhz:A, 5yi0:B, 5yi0:A, 5yi0:C, 5yi0:D, 5yi2:A, 5yi2:B, 5yi2:E, 5yi2:F, 5yi2:I, 5yi2:J, 5yi2:M, 5yi2:N, 5yi3:A, 5yi3:B, 5yi3:E, 5yi3:F, 5yi3:I, 5yi3:J, 5yi3:M, 5yi3:N
18 3hf2:A 428 45 0.0949 0.0350 0.3333 5.5 3dgi:B, 3hf2:B, 3psx:A, 3psx:B, 7y9m:B
19 8q6z:A 390 46 0.1076 0.0436 0.3696 6.3
20 7x0s:I 521 54 0.1266 0.0384 0.3704 6.7 8i1u:D, 8i1u:L, 8i9u:D, 8i9u:L, 7nvl:D, 7nvl:d, 7nvm:D, 7nvm:d, 7nvn:D, 7nvn:d, 8sff:D, 8sff:d, 8sg8:D, 8sg8:d, 8sg9:D, 8sg9:d, 8sgc:D, 8sgc:d, 8sgl:D, 8sgl:d, 8sgq:D, 8sgq:d, 8sh9:D, 8sh9:d, 8sha:D, 8sha:d, 8shd:D, 8shd:d, 8she:D, 8she:d, 8shf:D, 8shf:d, 8shg:D, 8shg:d, 8shl:D, 8shl:d, 8shn:D, 8shn:d, 8sho:D, 8sho:d, 8shp:D, 8shp:d, 8shq:D, 8shq:d, 8sht:D, 8sht:d, 7trg:F, 7ttn:F, 7ttt:F, 7tub:F, 7x0s:M, 7x0v:I, 7x0v:M, 7x3j:d, 7x3u:d
21 5loe:A 258 55 0.1013 0.0620 0.2909 7.1 2b18:A, 2gx5:C, 2hgv:A, 5loe:B, 5loe:C, 5loe:D
22 8sfe:d 489 54 0.1266 0.0409 0.3704 7.1 8sfe:D
23 8fcj:A 212 58 0.1266 0.0943 0.3448 7.3 8fcu:A, 8fd2:A, 8fd3:A, 8ff4:A, 8ff5:A
24 3a8r:B 167 51 0.1266 0.1198 0.3922 7.8 3a8r:A
25 3m5k:A 168 70 0.1266 0.1190 0.2857 9.7 3m5k:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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