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BioLiP
>protein
MPLILLPAVDVVEGRAVRLVTEYGSAVDAALGWQRDGAEWIHLVDLDAAFGRGSNHELLAEVVGKLDVQVELSGGIRDDE
SLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSRFV
VTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALAAVR

The query sequence (length=236) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2y88:A 244 243 0.9958 0.9631 0.9671 5.49e-164 2y85:A, 2y85:B, 2y85:C, 2y85:D, 3zs4:A
2 5dn1:A 240 240 0.6864 0.6750 0.6750 5.74e-107
3 4tx9:A 246 240 0.6864 0.6585 0.6750 9.00e-100
4 5abt:A 246 244 0.3390 0.3252 0.3279 1.97e-23 5a5w:A, 5ab3:A, 5ab3:B, 5ab3:C, 5ahf:A, 5ahi:A, 5g4w:A
5 1h5y:B 253 213 0.2754 0.2569 0.3052 5.06e-17 1h5y:A
6 7qc8:A 250 152 0.1907 0.1800 0.2961 3.40e-15 4ewn:D, 2wjz:E, 3zr4:E
7 3iiv:B 262 186 0.2034 0.1832 0.2581 7.72e-12 7ac8:A, 7ac8:C, 7ac8:E, 6ct3:A, 5d2t:A, 5d2w:A, 6dc1:A, 6dc1:B, 6dc1:H, 6dc1:K, 6dkv:A, 6dnj:A, 1gpw:C, 1gpw:E, 6rtz:A, 6ru0:A, 6ru0:C, 6ru0:E, 2wjz:A, 2wjz:C
8 9fcf:A 265 207 0.2288 0.2038 0.2609 1.39e-04 9fcg:A
9 3tdm:A 120 86 0.1059 0.2083 0.2907 3.06e-04 3tdm:B, 3tdm:C, 3tdm:D
10 3tdm:A 120 82 0.0932 0.1833 0.2683 0.95 3tdm:B, 3tdm:C, 3tdm:D
11 5lsm:A 339 96 0.1186 0.0826 0.2917 0.048 5lsm:B, 5lsm:C, 5lsm:D, 5lsm:E, 5lsm:F, 5lsm:G, 5lsm:H
12 1ox4:B 538 51 0.0720 0.0316 0.3333 0.12 1jvn:B, 1ox4:A, 1ox5:A, 1ox5:B, 1ox6:B
13 6ei9:A 306 145 0.1398 0.1078 0.2276 0.13 6ei9:B
14 1yiq:A 684 114 0.1314 0.0453 0.2719 0.42
15 1ep3:A 311 234 0.2415 0.1833 0.2436 0.42 1ep1:A, 1ep2:A, 5ksw:A, 5ksw:C, 5ue9:A, 5ue9:C
16 6e2a:A 326 85 0.1144 0.0828 0.3176 0.94 2gjl:A, 2gjn:A
17 3mly:H 230 70 0.0890 0.0913 0.3000 2.2 5gkr:A, 3mlx:H, 3mlx:I, 3mly:I, 3mlz:H, 6y1n:H
18 6bka:A 374 41 0.0720 0.0455 0.4146 3.2
19 5mkw:A 119 24 0.0424 0.0840 0.4167 4.1 5mkw:B
20 5hhk:B 289 41 0.0593 0.0484 0.3415 4.3
21 5a65:A 208 139 0.1398 0.1587 0.2374 5.0 5a64:A, 5a64:B, 5a65:B
22 3pf2:A 317 26 0.0593 0.0442 0.5385 5.2 3pg2:A, 3pg2:B
23 7l00:C 315 40 0.0636 0.0476 0.3750 6.1 7l00:A, 7l00:B, 7l00:D
24 3g0k:A 129 41 0.0508 0.0930 0.2927 6.8
25 6k0k:A 479 114 0.1144 0.0564 0.2368 7.1
26 7t8k:A 286 16 0.0339 0.0280 0.5000 7.7 7t8k:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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