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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MPCRLTRLFGEFPIIQAPMAGVQGSALAIAVSEAGGLGSLPCAMLSLEALEAELTAIRSQTAKPINVNFFCHREPVQAAK
QAAWLEQLAPYFAEFNLPNRTPYSKAQAEVLAKFKPEVVSFHFGLPDEELLLEIKSWSKVISTATTVEEALWLEARGADA
IIAQGLEAGGHRGHFLSEDLTEQLGTFSLLPQIIAAVEIPVIAAGGIVDATTVRAAMTMGASAVQVGTAYLLCPECNTSA
IHREALQSDAAQHTALTNLFSGRPARGIVNRFMAEMGPMNEAVPDFPLASSAVAGLRTAAERLGFWDFSPLWCGQNASGC
RAIPAADLTRSFV

The query sequence (length=333) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5lsm:A 339 335 0.9940 0.9764 0.9881 0.0 5lsm:B, 5lsm:C, 5lsm:D, 5lsm:E, 5lsm:F, 5lsm:G, 5lsm:H
2 4q4k:A 351 347 0.4775 0.4530 0.4582 1.89e-78 4q4k:B, 4qis:A, 4qis:B, 4qit:A, 4qit:B, 4qiu:A, 4qiu:B
3 3bw2:A 347 338 0.4114 0.3948 0.4053 2.43e-56 3bw3:A, 3bw4:A
4 6bka:A 374 326 0.3153 0.2807 0.3221 3.56e-41
5 7l00:C 315 334 0.2943 0.3111 0.2934 8.14e-33 7l00:A, 7l00:B, 7l00:D
6 5gvh:A 311 265 0.2492 0.2669 0.3132 2.83e-25
7 2z6i:B 321 323 0.2913 0.3022 0.3003 3.47e-25 2z6i:A, 2z6j:A, 2z6j:B
8 4iql:A 313 274 0.2553 0.2716 0.3102 1.49e-19 4iql:B
9 6e2a:A 326 237 0.2192 0.2239 0.3080 5.98e-15 2gjl:A, 2gjn:A
10 7e1q:A 366 114 0.1111 0.1011 0.3246 6.64e-11 7e1r:A, 7e1r:C, 7e1s:C, 7e1s:A
11 6gmb:A 362 105 0.0991 0.0912 0.3143 0.001 6gmc:A, 2nzl:A, 5qib:A, 5qic:A, 5qid:A, 5qie:A, 5qif:A, 5qig:A, 5qih:A, 7r4n:A, 7r4o:A, 2rdu:A, 2rdw:A
12 7r4p:A 337 105 0.0991 0.0979 0.3143 0.001 7m2o:A, 2rdt:A, 2w0u:A, 2w0u:B, 2w0u:C, 2w0u:D, 6w44:A, 6w45:A, 6w4c:A
13 4jej:A 241 34 0.0511 0.0705 0.5000 0.002
14 1zfj:A 476 70 0.0751 0.0525 0.3571 0.005
15 1ep3:A 311 53 0.0631 0.0675 0.3962 0.007 1ep1:A, 1ep2:A, 5ksw:A, 5ksw:C, 5ue9:A, 5ue9:C
16 5dn1:A 240 60 0.0691 0.0958 0.3833 0.013
17 5dn1:A 240 40 0.0420 0.0583 0.3500 9.8
18 1f76:A 336 125 0.1021 0.1012 0.2720 0.047 1f76:B, 1f76:D, 1f76:E, 7t5k:A, 7t5k:B, 7t5y:A, 7t5y:B, 7t6c:A, 7t6c:B, 7t6h:A, 7t6h:B
19 2y88:A 244 50 0.0511 0.0697 0.3400 0.072 2y85:A, 2y85:B, 2y85:C, 2y85:D, 3zs4:A
20 1eep:A 314 235 0.1652 0.1752 0.2340 0.095
21 4af0:A 395 307 0.2252 0.1899 0.2443 0.099 4af0:B
22 1me7:A 365 71 0.0661 0.0603 0.3099 0.13 1lrt:D, 1me8:A, 1me9:A, 1meh:A, 1mei:A, 1mew:A, 1pvn:A, 1pvn:B, 1pvn:C, 1pvn:D
23 4n6f:A 242 40 0.0541 0.0744 0.4500 0.18 4n6f:B
24 6dvh:A 394 131 0.1021 0.0863 0.2595 0.28 6dvh:B, 6dvh:C, 6dvh:D, 6dvh:E, 6dvh:F, 6dvi:A, 6dvi:B, 6dvi:C, 6dvi:E, 6dvi:F
25 3iiv:B 262 78 0.0661 0.0840 0.2821 0.30 7ac8:A, 7ac8:C, 7ac8:E, 6ct3:A, 5d2t:A, 5d2w:A, 6dc1:A, 6dc1:B, 6dc1:H, 6dc1:K, 6dkv:A, 6dnj:A, 1gpw:C, 1gpw:E, 6rtz:A, 6ru0:A, 6ru0:C, 6ru0:E, 2wjz:A, 2wjz:C
26 3usb:B 401 229 0.1652 0.1372 0.2402 0.35
27 3b4p:B 158 40 0.0420 0.0886 0.3500 0.35 3b4p:A, 3cnm:A, 3cnm:B, 3dzl:A, 3dzl:B, 3jum:A, 3jum:B, 3jun:A, 3jun:B, 3juo:A, 3juo:B, 3jup:A, 3jup:B, 3juq:A, 3juq:B
28 6b8s:B 336 92 0.0721 0.0714 0.2609 0.52 6b8s:A
29 6uy4:A 354 90 0.0871 0.0819 0.3222 0.52
30 4utu:A 229 43 0.0480 0.0699 0.3721 0.53 4utu:B, 4utw:A, 4utw:B, 4utw:C, 4utw:D
31 4fo4:A 348 114 0.0961 0.0920 0.2807 0.64 4fo4:B, 4ix2:A, 4ix2:B, 4ix2:C, 4ix2:D, 4qne:A, 4qne:B, 4x3z:A, 4x3z:B
32 6dvi:D 338 48 0.0541 0.0533 0.3750 1.2
33 8dow:D 217 72 0.0601 0.0922 0.2778 1.2 8dow:H, 8dow:L, 8dp1:M, 8dp1:F, 8dp1:O
34 9c4m:A 335 60 0.0601 0.0597 0.3333 1.5 9c4m:B, 9c4m:C, 9c4m:D, 9c4m:E, 9c4m:F, 9c4m:G, 9c4m:H
35 1b3o:A 304 48 0.0511 0.0559 0.3542 1.8
36 3hws:D 316 47 0.0480 0.0506 0.3404 1.8 3hws:B, 3hws:E, 4i4l:A, 4i81:A, 4i81:B
37 4a2r:A 247 40 0.0360 0.0486 0.3000 1.8 5an7:A, 4pa8:A, 8xyn:A, 8xyn:B
38 3sgz:A 336 97 0.0811 0.0804 0.2784 2.4 3sgz:B, 3sgz:C, 1tb3:A, 1tb3:B, 1tb3:C, 1tb3:D, 1tb3:E, 1tb3:F, 1tb3:G, 1tb3:H
39 4ke8:C 249 61 0.0751 0.1004 0.4098 2.5 4ke6:A, 4ke7:A, 4ke7:B, 4ke8:A, 4ke8:B, 4ke8:D, 4ke9:A, 4ke9:B, 4ke9:C, 4ke9:D
40 1b3o:B 410 48 0.0511 0.0415 0.3542 2.5
41 6rxt:UM 729 70 0.0631 0.0288 0.3000 2.7 5oql:J, 6rxu:UM, 6rxv:UM, 6rxx:UM
42 7oj1:B 425 59 0.0601 0.0471 0.3390 2.7
43 7oj1:A 401 59 0.0601 0.0499 0.3390 3.3
44 6rxy:UM 679 70 0.0631 0.0309 0.3000 3.4 6rxz:UM
45 6uc2:A 453 30 0.0390 0.0287 0.4333 3.6 6i0m:B, 6i0o:A, 6uc2:B, 6uc2:C, 6uc2:D, 6uc2:E, 6uc2:F, 6uc2:G, 6uc2:H
46 1nf7:A 454 30 0.0390 0.0286 0.4333 3.7 1jr1:A, 1nf7:B
47 4fxs:A 467 105 0.0871 0.0621 0.2762 3.7
48 8g8f:A 491 30 0.0390 0.0265 0.4333 3.8 8g8f:B, 8g8f:C, 8g8f:D, 8g8f:E, 8g8f:F, 8g8f:G, 8g8f:H, 8g9b:A, 8g9b:B, 8g9b:C, 8g9b:D, 8g9b:E, 8g9b:F, 8g9b:G, 8g9b:H, 6i0m:A, 6i0o:B, 6u8n:A, 6u8n:B, 6u8n:C, 6u8n:D, 6u8n:E, 6u8n:F, 6u8n:G, 6u8n:H, 6u8r:D, 6u8r:A, 6u8r:B, 6u8r:C, 6u8r:H, 6u8r:E, 6u8r:F, 6u8r:G, 6u9o:A, 6u9o:B, 6u9o:C, 6u9o:D, 6u9o:E, 6u9o:F, 6u9o:G, 6u9o:H, 6ua2:B, 6ua2:A, 6ua2:D, 6ua2:C, 6ua2:F, 6ua2:E, 6ua2:H, 6ua2:G, 6ua4:B, 6ua4:A, 6ua4:D, 6ua4:C, 6ua4:F, 6ua4:E, 6ua4:H, 6ua4:G, 6uaj:A, 6uaj:B, 6uaj:C, 6uaj:D, 6uaj:E, 6uaj:F, 6uaj:G, 6uaj:H, 6udo:A, 6udo:B, 6udo:C, 6udo:D, 6udo:E, 6udo:F, 6udo:G, 6udo:H, 6udq:A, 6udq:B, 6udq:C, 6udq:D, 6udq:E, 6udq:F, 6udq:G, 6udq:H
49 8fuz:A 390 30 0.0390 0.0333 0.4333 3.9 8foz:A, 8foz:B, 8foz:C, 8foz:D, 8foz:E, 8foz:F, 8foz:G, 8foz:H, 8fuz:B, 8fuz:C, 8fuz:D, 8fuz:E, 8fuz:F, 8fuz:G, 8fuz:H, 1jr1:B, 6u8e:A, 6u8e:B, 6u8e:C, 6u8e:D, 6u8e:E, 6u8e:F, 6u8e:G, 6u8e:H, 6u8s:A, 6u8s:B, 6u8s:C, 6u8s:D, 6u8s:E, 6u8s:F, 6u8s:G, 6u8s:H, 6ua5:A, 6ua5:B, 6ua5:C, 6ua5:D, 6ua5:E, 6ua5:F, 6ua5:G, 6ua5:H, 6udp:A, 6udp:B, 6udp:C, 6udp:D, 6udp:E, 6udp:F, 6udp:G, 6udp:H
50 6bfg:A 373 83 0.0781 0.0697 0.3133 3.9 2a7n:A, 2a7p:A, 2a85:A, 6bfg:B, 3giy:A, 1p4c:A, 1p5b:A
51 5ahn:A 297 62 0.0601 0.0673 0.3226 3.9
52 8p4q:E 390 265 0.1862 0.1590 0.2340 4.2 8p37:A, 8p4q:A, 8p4q:B, 8p4q:C, 8p4q:D, 8p4q:F, 8p4q:G, 8p4q:H
53 6mgr:C 369 48 0.0541 0.0488 0.3750 4.4 6mgr:A, 6mgr:B, 6mgr:D, 4mz1:A, 4mz1:B, 4mz1:C, 4mz8:A, 4mz8:B, 4mz8:C, 4mz8:D, 4r7j:A, 5uqf:A, 5uqf:B, 5uqf:C, 5uqg:A, 5uqg:B, 5uqg:H, 5uqg:C, 5uqg:G, 5uqg:D, 5uqg:E, 5uqg:F, 5uqh:A, 5uqh:B, 5uqh:C, 5uqh:D, 5uqh:E, 5uqh:F, 5uqh:G, 5uqh:H, 5urq:A, 5urq:D, 5urq:B, 5urq:C, 5urq:E, 5urq:H, 5urq:F, 5urq:G
54 1nfb:A 396 30 0.0390 0.0328 0.4333 4.5 1nfb:B
55 7qc8:A 250 52 0.0450 0.0600 0.2885 4.7 4ewn:D, 2wjz:E, 3zr4:E
56 3khj:A 302 111 0.0991 0.1093 0.2973 4.8 3khj:E, 3khj:F, 3khj:G
57 1huv:A 349 83 0.0781 0.0745 0.3133 4.9
58 6ei9:A 306 34 0.0480 0.0523 0.4706 4.9 6ei9:B
59 7pji:A 445 174 0.1141 0.0854 0.2184 4.9 4dqw:A, 4dqw:B, 6gk9:A, 6gk9:D, 7pji:B
60 4qj1:D 346 111 0.0991 0.0954 0.2973 5.1 4ixh:A, 4ixh:D, 4ixh:B, 4ixh:C, 3khj:B, 3khj:C, 3khj:D, 3khj:H, 4qj1:A, 4qj1:B, 4qj1:C, 4rv8:A, 4rv8:D, 4rv8:B, 4rv8:C
61 5ahm:A 354 65 0.0661 0.0621 0.3385 5.4 5ahm:B
62 1bf2:A 750 202 0.1381 0.0613 0.2277 5.4
63 4tx9:A 246 60 0.0691 0.0935 0.3833 5.7
64 7oj2:A 353 47 0.0511 0.0482 0.3617 6.4
65 4z38:B 439 259 0.1622 0.1230 0.2085 8.6 4z38:A
66 1kbi:A 504 51 0.0450 0.0298 0.2941 9.1 1fcb:A, 1fcb:B, 1kbi:B, 1kbj:A, 1kbj:B, 3ks0:A, 3ks0:B, 1lco:A, 1lco:B, 1ldc:A, 1ltd:A, 1ltd:B, 2oz0:A, 2oz0:B, 1qcw:A, 1qcw:B, 1sze:A, 1sze:B, 1szf:A, 1szf:B, 1szg:A, 1szg:B
67 1ldc:B 382 51 0.0450 0.0393 0.2941 9.3
68 8svz:A 120 64 0.0571 0.1583 0.2969 9.9 8svz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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