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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNVIMREIGKKLDELSREFYESVIPPIDMYEEGGELVVVADLAGFNKDKISVRLSAQNELIINAEREIQYIGTKYATQRP
LKIHKVIRLPVKVKRDSQVTAKYENGVLTIRIPVEGSVSIRIE

The query sequence (length=123) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4yl9:D 123 123 1.0000 1.0000 1.0000 9.71e-86
2 3vqm:A 111 109 0.5935 0.6577 0.6697 3.58e-48 3vqm:B, 3vqm:C, 3vqm:E, 3vqm:F, 3vqm:I, 3vqm:K, 3vqm:M, 3vqm:N
3 3gla:B 99 97 0.2602 0.3232 0.3299 3.24e-05 3gla:A
4 5zs3:A 113 90 0.2033 0.2212 0.2778 4.80e-04 5zs6:A
5 5oql:c 175 43 0.1382 0.0971 0.3953 0.80
6 2gq3:A 720 36 0.0976 0.0167 0.3333 0.93 6apz:A, 6as6:A, 6asu:A, 6au9:A, 6axb:A, 6ba7:A, 6bu1:A, 6c2x:A, 6c6o:A, 5c7v:A, 6c7b:A, 6c8p:A, 5c9r:A, 5c9u:A, 5c9w:A, 5c9x:A, 5cah:A, 5cak:A, 5cbb:A, 5cbi:A, 5cbj:A, 5cc3:A, 5cc5:A, 5cc6:A, 5cc7:A, 5ccz:A, 5cew:A, 5cjm:A, 5cjn:A, 6dko:A, 6dl9:A, 6dlj:A, 6dnp:A, 5drc:A, 5dri:A, 5dx7:A, 5e9x:A, 5ecv:A, 2gq3:B, 5h8m:A, 5h8u:A, 5h8u:B, 1n8i:A, 1n8w:A, 1n8w:B, 3s9i:A, 3s9z:A, 3sad:A, 3saz:A, 3sb0:A, 5t8g:A
7 4nv1:E 242 31 0.1138 0.0579 0.4516 1.4 4nv1:C, 4nv1:D, 4nv1:F, 4nv1:B, 4nv1:A, 4nv1:G, 4nv1:H
8 6vtj:A 472 42 0.0976 0.0254 0.2857 3.9
9 7uft:A 1032 34 0.0894 0.0107 0.3235 4.2 7uft:B, 7uft:C, 7uft:D
10 7smk:A 455 26 0.0894 0.0242 0.4231 5.2 7snv:A
11 7oa6:B 152 33 0.1138 0.0921 0.4242 5.3 7oa6:I
12 1htt:A 366 32 0.0894 0.0301 0.3438 7.1 1htt:B, 1htt:C, 1htt:D, 1kmm:B, 1kmm:D, 1kmn:B, 1kmn:D
13 5x8f:B 485 23 0.0732 0.0186 0.3913 8.1 5buq:B, 5bur:A, 5bur:B, 5bus:A, 5bus:B, 5gtd:A, 5gtd:B, 5x8f:A, 5x8f:C, 5x8f:D, 5x8g:A, 5x8g:B, 5x8g:D, 5x8g:C
14 7r76:A 1834 59 0.1545 0.0104 0.3220 8.9 7r77:A
15 1kmm:C 387 31 0.0894 0.0284 0.3548 9.0 2el9:A, 2el9:B, 2el9:C, 2el9:D, 1kmm:A, 1kmn:A, 1kmn:C
16 7r78:A 1880 59 0.1545 0.0101 0.3220 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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