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BioLiP
>protein
MNTRTIYLAGGSFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDILQYFFRVVD
PTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPLKNFYDAEEYHQDYLIKNPNGYCHIDIRK
ADEPLPG

The query sequence (length=167) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3bqf:A 167 167 1.0000 1.0000 1.0000 6.11e-125
2 7e43:B 324 164 0.5868 0.3025 0.5976 3.99e-67 7e43:A
3 3e0m:C 313 160 0.4970 0.2652 0.5188 7.39e-56 3e0m:A, 3e0m:B
4 4d7l:A 213 168 0.3952 0.3099 0.3929 2.93e-31 4d7l:B, 4d7l:C
5 4lwm:A 205 143 0.3054 0.2488 0.3566 3.95e-20
6 7nit:D 1253 87 0.1557 0.0208 0.2989 0.50 5dmy:A, 5dmy:B, 5dmy:C, 7nit:A, 7nit:B, 7nit:C, 7nit:E, 7nit:F, 6qub:A, 6qub:B, 6quc:A, 6quc:B
7 6l2n:A 217 58 0.1138 0.0876 0.3276 3.0 5iff:A, 5iff:B, 6l2n:B, 6l2o:A, 6l2o:B, 6m3l:A, 3waz:A, 3waz:B
8 6xkw:p 254 57 0.1018 0.0669 0.2982 3.3 6xkx:p, 6xkz:p
9 1dgp:A 290 58 0.1198 0.0690 0.3448 6.0 1dgp:B
10 6c7n:A 553 55 0.0958 0.0289 0.2909 9.2 6c7n:B, 6c7n:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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