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BioLiP
>protein
MNQGRIWTVVNPGVGLPLLLGSVTVIAILVHYAVLSNTTWFPKYWNGAT

The query sequence (length=49) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7zdi:A 49 49 1.0000 1.0000 1.0000 4.58e-30 7zdi:C, 7zdi:E, 7zdi:Q, 7zdi:G, 7zdi:I, 7zdi:K, 7zdi:M, 7zdi:O
2 7zcu:A 50 47 0.8367 0.8200 0.8723 1.32e-24 7zcu:C, 7zcu:E, 7zcu:Q, 7zcu:G, 7zcu:I, 7zcu:K, 7zcu:M, 7zcu:O, 7ze8:A, 7ze8:Q, 7ze8:O, 7ze8:C, 7ze8:E, 7ze8:G, 7ze8:I, 7ze8:K, 7ze8:M
3 2fkw:A 53 47 0.7551 0.6981 0.7872 4.37e-23 2fkw:C, 2fkw:E, 2fkw:G, 2fkw:I, 2fkw:K, 2fkw:M, 2fkw:O, 2fkw:R, 1kzu:A, 1kzu:D, 1kzu:G, 1nkz:A, 1nkz:C, 1nkz:E
4 7ze3:A 48 47 0.6735 0.6875 0.7021 3.18e-19 7ze3:Q, 7ze3:C, 7ze3:E, 7ze3:G, 7ze3:I, 7ze3:K, 7ze3:M, 7ze3:O
5 1ijd:A 46 44 0.5510 0.5870 0.6136 2.72e-15 1ijd:C, 1ijd:E
6 7pbw:AA 50 48 0.4490 0.4400 0.4583 9.57e-13 7pbw:AB, 7pbw:AC, 7pbw:AD, 7pbw:AE, 7pbw:AF, 7pbw:AG, 7pbw:AH, 7pbw:AI
7 6et5:3 58 33 0.2449 0.2069 0.3636 0.025 6et5:P, 6et5:S, 6et5:V, 6et5:Y, 6et5:b, 6et5:e, 6et5:h, 6et5:k, 6et5:n, 6et5:q, 6et5:t, 6et5:w, 6et5:z, 6et5:6, 6et5:F, 6et5:K
8 7vrj:7 44 33 0.2245 0.2500 0.3333 0.057 7vrj:A, 7vrj:9, 7vrj:I, 7vrj:K, 7vrj:O, 7vrj:Q, 7vrj:1, 7vrj:5, 8wdu:7, 8wdu:9, 8wdu:O, 8wdu:A, 8wdu:I, 8wdu:K, 8wdu:Q, 8wdu:1, 8wdu:5, 8wdv:7, 8wdv:O, 8wdv:A, 8wdv:9, 8wdv:I, 8wdv:K, 8wdv:Q, 8wdv:1, 8wdv:5
9 7o0u:ak 71 36 0.2245 0.1549 0.3056 0.074 7o0u:ah, 7o0u:ac, 7o0u:af, 7o0u:aa, 7o0u:ab, 7o0u:ad, 7o0u:ae, 7o0u:ag, 7o0u:ai, 7o0u:aj, 7o0u:al, 7o0u:am, 7o0u:an, 7o0u:ao, 7o0u:ap, 7o0v:af, 7o0v:ah, 7o0v:ac, 7o0v:ae, 7o0v:aa, 7o0v:ab, 7o0v:ad, 7o0v:ag, 7o0v:ai, 7o0v:aj, 7o0v:ak, 7o0v:al, 7o0v:am, 7o0v:an, 7o0v:ao, 7o0v:ap, 7o0w:ac, 7o0w:af, 7o0w:aa, 7o0w:ab, 7o0w:ad, 7o0w:ae, 7o0w:ag, 7o0w:ah, 7o0w:ai, 7o0w:aj, 7o0w:ak, 7o0w:al, 7o0w:am, 7o0w:an, 7o0w:ao, 7o0w:ap, 7o0x:ah, 7o0x:ac, 7o0x:af, 7o0x:aa, 7o0x:ab, 7o0x:ad, 7o0x:ae, 7o0x:ag, 7o0x:ai, 7o0x:aj, 7o0x:ak, 7o0x:al, 7o0x:am, 7o0x:ao, 7o0x:an, 7o0x:ap
10 6z5r:T 48 34 0.2449 0.2500 0.3529 0.097 6z5r:C, 6z5r:E, 6z5r:A, 6z5r:G, 6z5r:J, 6z5r:N, 6z5r:P, 6z5r:9, 6z5r:R, 6z5r:V, 6z5r:Y, 6z5r:1, 6z5r:3, 6z5r:5, 6z5r:7, 6z5s:R, 6z5s:1, 6z5s:Y, 6z5s:3, 6z5s:5, 6z5s:V, 6z5s:T, 6z5s:A, 6z5s:C, 6z5s:E, 6z5s:P, 6z5s:N, 6z5s:J, 6z5s:G
11 8fb9:A 56 35 0.2857 0.2500 0.4000 0.19 8fb9:D, 8fb9:C, 8fb9:G, 8fb9:I, 8fb9:K, 8fb9:c, 8fb9:e, 8fbb:Q, 8fbb:S, 8fbb:U, 8fbb:W, 8fbb:Y, 8fbb:a, 8fbb:c, 8fbb:e, 7tuw:A, 7tuw:D, 7tuw:C, 7tuw:G, 7tuw:I, 7tuw:K, 7tuw:c, 7tuw:e, 7tv3:Q, 7tv3:S, 7tv3:U, 7tv3:W, 7tv3:Y, 7tv3:a, 7tv3:c, 7tv3:e
12 7oy8:8 48 34 0.2449 0.2500 0.3529 0.19 7eqd:A, 7eqd:D, 7eqd:9, 7eqd:F, 7eqd:I, 7eqd:K, 7eqd:O, 7eqd:Q, 7eqd:S, 7eqd:U, 7eqd:W, 7eqd:Y, 7eqd:1, 7eqd:3, 7eqd:5, 7eqd:7, 7oy8:Z, 7oy8:X, 7oy8:2, 7oy8:4, 7oy8:6, 7oy8:D, 7oy8:A, 7oy8:E, 7oy8:F, 7oy8:G, 7oy8:J, 7oy8:N, 7oy8:R, 7oy8:T, 7oy8:V
13 6q53:D 57 41 0.2857 0.2456 0.3415 0.19 6q53:A
14 6jp4:A 770 24 0.2041 0.0130 0.4167 1.5 6jp4:B, 6jp4:C, 6jph:A, 6jpn:A
15 8apq:A 406 22 0.2041 0.0246 0.4545 2.1 8apq:B, 8apq:C, 8apq:D, 8apq:E, 8apq:F
16 6zxa:A 69 35 0.2449 0.1739 0.3429 3.1 6zxa:C, 6zxa:M, 6zxa:E, 6zxa:G, 6zxa:I, 6zxa:K
17 7vrj:3 65 33 0.2041 0.1538 0.3030 3.9 8wdu:3, 8wdv:3
18 6d35:A 581 20 0.1633 0.0138 0.4000 4.4 6d32:A, 5kzv:A, 5kzy:A, 5kzy:B, 5kzz:A, 1lm3:B, 1lm3:D, 1qq3:A
19 7vrj:Y 63 36 0.1837 0.1429 0.2500 5.7 7vrj:D, 7vrj:F, 7vrj:W
20 8cxo:A 551 20 0.1429 0.0127 0.3500 6.4
21 5v57:A 645 20 0.1429 0.0109 0.3500 7.0 1akq:A, 1akr:A, 1akt:A, 1aku:A, 1akv:A, 1akw:A, 1azl:A, 1bu5:A, 1bu5:B, 1c7e:A, 1c7e:B, 1c7f:A, 1c7f:B, 1f4p:A, 1fx1:A, 2fx2:A, 3fx2:A, 4fx2:A, 5fx2:A, 1i1o:A, 1j8q:A, 1j9e:A, 1j9g:A, 5v56:A, 5v56:B, 5v57:B, 1wsb:A, 1wsw:A, 1xt6:A, 1xyv:A, 1xyy:A, 5yob:A, 5yoc:A, 5yoe:A, 5yog:A
22 7c9r:9 84 47 0.2449 0.1429 0.2553 7.1
23 8qby:H 342 22 0.2449 0.0351 0.5455 7.4
24 4n4w:A 457 20 0.1429 0.0153 0.3500 7.7 4jkv:A, 4jkv:B
25 7wku:A 304 40 0.2653 0.0428 0.3250 8.5 8e7c:A, 8e7c:B, 7wku:E, 7wku:F, 7wku:B, 7wku:C, 7wku:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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