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BioLiP
>protein
MNQGRIWTVVKPTVGLPLLLGSVTVIAILVHFAVLSNTTWFSKYWNGK

The query sequence (length=48) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7zcu:A 50 48 0.9583 0.9200 0.9583 3.45e-28 7zcu:C, 7zcu:E, 7zcu:Q, 7zcu:G, 7zcu:I, 7zcu:K, 7zcu:M, 7zcu:O, 7ze8:A, 7ze8:Q, 7ze8:O, 7ze8:C, 7ze8:E, 7ze8:G, 7ze8:I, 7ze8:K, 7ze8:M
2 7zdi:A 49 48 0.8958 0.8776 0.8958 1.09e-25 7zdi:C, 7zdi:E, 7zdi:Q, 7zdi:G, 7zdi:I, 7zdi:K, 7zdi:M, 7zdi:O
3 7ze3:A 48 48 0.7708 0.7708 0.7708 2.31e-22 7ze3:Q, 7ze3:C, 7ze3:E, 7ze3:G, 7ze3:I, 7ze3:K, 7ze3:M, 7ze3:O
4 2fkw:A 53 47 0.7292 0.6604 0.7447 1.75e-21 2fkw:C, 2fkw:E, 2fkw:G, 2fkw:I, 2fkw:K, 2fkw:M, 2fkw:O, 2fkw:R, 1kzu:A, 1kzu:D, 1kzu:G, 1nkz:A, 1nkz:C, 1nkz:E
5 1ijd:A 46 44 0.5625 0.5870 0.6136 5.36e-16 1ijd:C, 1ijd:E
6 7pbw:AA 50 48 0.4792 0.4600 0.4792 3.34e-13 7pbw:AB, 7pbw:AC, 7pbw:AD, 7pbw:AE, 7pbw:AF, 7pbw:AG, 7pbw:AH, 7pbw:AI
7 6et5:3 58 33 0.2708 0.2241 0.3939 0.025 6et5:P, 6et5:S, 6et5:V, 6et5:Y, 6et5:b, 6et5:e, 6et5:h, 6et5:k, 6et5:n, 6et5:q, 6et5:t, 6et5:w, 6et5:z, 6et5:6, 6et5:F, 6et5:K
8 7o0u:ak 71 36 0.2500 0.1690 0.3333 0.048 7o0u:ah, 7o0u:ac, 7o0u:af, 7o0u:aa, 7o0u:ab, 7o0u:ad, 7o0u:ae, 7o0u:ag, 7o0u:ai, 7o0u:aj, 7o0u:al, 7o0u:am, 7o0u:an, 7o0u:ao, 7o0u:ap, 7o0v:af, 7o0v:ah, 7o0v:ac, 7o0v:ae, 7o0v:aa, 7o0v:ab, 7o0v:ad, 7o0v:ag, 7o0v:ai, 7o0v:aj, 7o0v:ak, 7o0v:al, 7o0v:am, 7o0v:an, 7o0v:ao, 7o0v:ap, 7o0w:ac, 7o0w:af, 7o0w:aa, 7o0w:ab, 7o0w:ad, 7o0w:ae, 7o0w:ag, 7o0w:ah, 7o0w:ai, 7o0w:aj, 7o0w:ak, 7o0w:al, 7o0w:am, 7o0w:an, 7o0w:ao, 7o0w:ap, 7o0x:ah, 7o0x:ac, 7o0x:af, 7o0x:aa, 7o0x:ab, 7o0x:ad, 7o0x:ae, 7o0x:ag, 7o0x:ai, 7o0x:aj, 7o0x:ak, 7o0x:al, 7o0x:am, 7o0x:ao, 7o0x:an, 7o0x:ap
9 7vrj:7 44 36 0.2500 0.2727 0.3333 0.053 7vrj:A, 7vrj:9, 7vrj:I, 7vrj:K, 7vrj:O, 7vrj:Q, 7vrj:1, 7vrj:5, 8wdu:7, 8wdu:9, 8wdu:O, 8wdu:A, 8wdu:I, 8wdu:K, 8wdu:Q, 8wdu:1, 8wdu:5, 8wdv:7, 8wdv:O, 8wdv:A, 8wdv:9, 8wdv:I, 8wdv:K, 8wdv:Q, 8wdv:1, 8wdv:5
10 6z5r:T 48 34 0.2708 0.2708 0.3824 0.13 6z5r:C, 6z5r:E, 6z5r:A, 6z5r:G, 6z5r:J, 6z5r:N, 6z5r:P, 6z5r:9, 6z5r:R, 6z5r:V, 6z5r:Y, 6z5r:1, 6z5r:3, 6z5r:5, 6z5r:7, 6z5s:R, 6z5s:1, 6z5s:Y, 6z5s:3, 6z5s:5, 6z5s:V, 6z5s:T, 6z5s:A, 6z5s:C, 6z5s:E, 6z5s:P, 6z5s:N, 6z5s:J, 6z5s:G
11 7oy8:8 48 33 0.2708 0.2708 0.3939 0.24 7eqd:A, 7eqd:D, 7eqd:9, 7eqd:F, 7eqd:I, 7eqd:K, 7eqd:O, 7eqd:Q, 7eqd:S, 7eqd:U, 7eqd:W, 7eqd:Y, 7eqd:1, 7eqd:3, 7eqd:5, 7eqd:7, 7oy8:Z, 7oy8:X, 7oy8:2, 7oy8:4, 7oy8:6, 7oy8:D, 7oy8:A, 7oy8:E, 7oy8:F, 7oy8:G, 7oy8:J, 7oy8:N, 7oy8:R, 7oy8:T, 7oy8:V
12 8fb9:A 56 35 0.2708 0.2321 0.3714 1.5 8fb9:D, 8fb9:C, 8fb9:G, 8fb9:I, 8fb9:K, 8fb9:c, 8fb9:e, 8fbb:Q, 8fbb:S, 8fbb:U, 8fbb:W, 8fbb:Y, 8fbb:a, 8fbb:c, 8fbb:e, 7tuw:A, 7tuw:D, 7tuw:C, 7tuw:G, 7tuw:I, 7tuw:K, 7tuw:c, 7tuw:e, 7tv3:Q, 7tv3:S, 7tv3:U, 7tv3:W, 7tv3:Y, 7tv3:a, 7tv3:c, 7tv3:e
13 6xyw:Bb 281 13 0.1458 0.0249 0.5385 5.0
14 7yfl:A 708 26 0.2500 0.0169 0.4615 6.8 7yfl:C
15 8apq:A 406 22 0.1875 0.0222 0.4091 7.2 8apq:B, 8apq:C, 8apq:D, 8apq:E, 8apq:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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