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BioLiP
>protein
MNQGKIWTVVPPAFGLPLMLGAVAITALLVHAAVLTHTTWYAAFLQ

The query sequence (length=46) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1ijd:A 46 46 1.0000 1.0000 1.0000 2.54e-27 1ijd:C, 1ijd:E
2 7ze3:A 48 46 0.6957 0.6667 0.6957 6.77e-18 7ze3:Q, 7ze3:C, 7ze3:E, 7ze3:G, 7ze3:I, 7ze3:K, 7ze3:M, 7ze3:O
3 2fkw:A 53 46 0.6304 0.5472 0.6304 7.21e-17 2fkw:C, 2fkw:E, 2fkw:G, 2fkw:I, 2fkw:K, 2fkw:M, 2fkw:O, 2fkw:R, 1kzu:A, 1kzu:D, 1kzu:G, 1nkz:A, 1nkz:C, 1nkz:E
4 7zcu:A 50 44 0.5870 0.5400 0.6136 8.24e-16 7zcu:C, 7zcu:E, 7zcu:Q, 7zcu:G, 7zcu:I, 7zcu:K, 7zcu:M, 7zcu:O, 7ze8:A, 7ze8:Q, 7ze8:O, 7ze8:C, 7ze8:E, 7ze8:G, 7ze8:I, 7ze8:K, 7ze8:M
5 7zdi:A 49 44 0.5870 0.5510 0.6136 2.55e-15 7zdi:C, 7zdi:E, 7zdi:Q, 7zdi:G, 7zdi:I, 7zdi:K, 7zdi:M, 7zdi:O
6 7pbw:AA 50 46 0.5435 0.5000 0.5435 1.28e-11 7pbw:AB, 7pbw:AC, 7pbw:AD, 7pbw:AE, 7pbw:AF, 7pbw:AG, 7pbw:AH, 7pbw:AI
7 8fb9:A 56 35 0.2826 0.2321 0.3714 0.24 8fb9:D, 8fb9:C, 8fb9:G, 8fb9:I, 8fb9:K, 8fb9:c, 8fb9:e, 8fbb:Q, 8fbb:S, 8fbb:U, 8fbb:W, 8fbb:Y, 8fbb:a, 8fbb:c, 8fbb:e, 7tuw:A, 7tuw:D, 7tuw:C, 7tuw:G, 7tuw:I, 7tuw:K, 7tuw:c, 7tuw:e, 7tv3:Q, 7tv3:S, 7tv3:U, 7tv3:W, 7tv3:Y, 7tv3:a, 7tv3:c, 7tv3:e
8 6q53:D 57 37 0.3696 0.2982 0.4595 0.29 6q53:A
9 6zxa:A 69 35 0.2391 0.1594 0.3143 4.3 6zxa:C, 6zxa:M, 6zxa:E, 6zxa:G, 6zxa:I, 6zxa:K
10 7vrj:7 44 32 0.2174 0.2273 0.3125 4.5 7vrj:A, 7vrj:9, 7vrj:I, 7vrj:K, 7vrj:O, 7vrj:Q, 7vrj:1, 7vrj:5, 8wdu:7, 8wdu:9, 8wdu:O, 8wdu:A, 8wdu:I, 8wdu:K, 8wdu:Q, 8wdu:1, 8wdu:5, 8wdv:7, 8wdv:O, 8wdv:A, 8wdv:9, 8wdv:I, 8wdv:K, 8wdv:Q, 8wdv:1, 8wdv:5
11 7qv7:S 571 25 0.1739 0.0140 0.3200 5.6 7qv7:Y
12 8des:A 475 28 0.1957 0.0189 0.3214 6.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417