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BioLiP
>protein
MNPNCARCGKIVYPTEKVNCLDKFWHKACF

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1zfo:A 30 30 1.0000 1.0000 1.0000 6.70e-18
2 1b8t:A 192 29 0.5000 0.0781 0.5172 1.12e-04 1ctl:A
3 1b8t:A 192 26 0.4000 0.0625 0.4615 0.082 1ctl:A
4 2o13:A 58 26 0.5333 0.2759 0.6154 1.77e-04
5 2cu8:A 76 30 0.5000 0.1974 0.5000 0.001
6 1iml:A 76 28 0.4333 0.1711 0.4643 0.003
7 1cxx:A 59 26 0.4667 0.2373 0.5385 0.005 1ibi:A, 1qli:A
8 1a7i:A 60 26 0.3667 0.1833 0.4231 0.006
9 2o10:A 60 29 0.3667 0.1833 0.3793 0.015
10 8y6k:A 741 26 0.3333 0.0135 0.3846 0.041 2bra:A, 2bra:B, 2bry:A, 2bry:B, 2c4c:A, 2c4c:B, 4txi:A, 4txk:A
11 2lzu:A 72 30 0.3667 0.1528 0.3667 0.10
12 2co8:A 82 26 0.3333 0.1220 0.3846 0.27
13 2d8y:A 91 26 0.3333 0.1099 0.3846 0.29
14 2dj7:A 80 27 0.3333 0.1250 0.3704 0.52
15 2cuq:A 80 28 0.3667 0.1375 0.3929 1.4
16 6cme:A 154 28 0.3000 0.0584 0.3214 1.6 6cme:B, 3mmk:A, 3mmk:B
17 8yhd:G 234 16 0.2667 0.0342 0.5000 2.2 8yhe:G, 8z4j:G, 8z4l:G, 8z99:G, 8z9c:G
18 5wwp:B 591 21 0.2667 0.0135 0.3810 2.2
19 5wwp:A 515 21 0.2667 0.0155 0.3810 3.1
20 4v8p:AA 91 16 0.2667 0.0879 0.5000 3.3 4v8p:DA, 4v8p:FA, 4v8p:HA
21 1m3v:A 122 26 0.2667 0.0656 0.3077 3.4
22 2jtn:A 182 28 0.3000 0.0495 0.3214 3.8
23 7zpq:CC 114 17 0.3000 0.0789 0.5294 4.1 7zrs:CC, 7zuw:CC
24 1x4k:A 72 28 0.3333 0.1389 0.3571 4.4
25 2l4z:A 121 26 0.2667 0.0661 0.3077 6.4
26 2rgt:B 154 28 0.3000 0.0584 0.3214 6.7 2rgt:A
27 2xqn:T 125 24 0.2333 0.0560 0.2917 7.1 2iyb:E, 2iyb:F, 2iyb:G, 2iyb:H
28 1x3h:A 80 30 0.3000 0.1125 0.3000 7.3
29 5xtc:b 124 16 0.2333 0.0565 0.4375 8.1 5xtd:b, 5xth:b, 5xti:b, 5xti:Bb
30 2miu:A 98 28 0.3667 0.1122 0.3929 8.1
31 2dfy:X 158 26 0.2667 0.0506 0.3077 9.6 2dfy:C, 1rut:X

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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