Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNNTDLIHLIKHFMHNELKAVEEVIDSPLSEFANLIKVLQSCQGKVVFIGVGKSGIIARKLAATFASTGTPSFFVHGTEA
VHGDLGMVAKDDVVILISNSGETAEILATLPSLKKMGNYLISFTRSHHSSLAISCDLSVEIPVKSEADNLGLAPSCSSTV
VLVVGDAVALALSELKKFTRADFGLYHP

The query sequence (length=188) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5uqi:A 188 188 1.0000 1.0000 1.0000 1.45e-136
2 3etn:B 198 186 0.3457 0.3283 0.3495 1.24e-21 3etn:A, 3etn:C, 3etn:D
3 4lzj:B 299 166 0.2447 0.1538 0.2771 5.10e-06 4lzj:C, 4lzj:D, 4lzj:A
4 6r4e:A 663 144 0.2074 0.0588 0.2708 4.26e-04 7ndl:A, 7ndl:B, 6r4e:B, 6r4f:A, 6r4f:B, 6r4g:A, 6r4g:B, 6r4h:A, 6r4h:B, 6r4i:A, 6r4i:B, 6r4j:A, 6r4j:B, 6svm:A, 6svm:B, 6svo:A, 6svo:B, 6svp:A, 6svp:B, 6svq:A, 6svq:B, 2v4m:A, 2v4m:B, 2v4m:C, 2v4m:D, 2zj3:A, 2zj4:A, 6zmj:A, 6zmj:B, 6zmk:A, 6zmk:B
5 2x3y:A 202 172 0.2287 0.2129 0.2500 0.001 5ltz:A, 5ltz:B, 5ltz:D, 5ltz:C, 5lu5:A, 5lu5:B, 5lu5:C, 5lu5:D, 5lu6:A, 5lu6:B, 5lu6:C, 5lu6:D, 5lu7:A, 5lu7:B, 5lu7:D, 5lu7:C, 8v2t:A, 8v4j:A, 2x3y:B, 2x3y:C, 2x3y:D, 2x3y:E, 2x3y:F, 2x3y:G, 2x3y:H, 2xbl:A, 2xbl:B, 2xbl:D, 2xbl:C
6 8tx9:A 190 110 0.1543 0.1526 0.2636 0.001 8tx9:B, 8tx9:C, 8tx9:D
7 2df8:A 325 117 0.1649 0.0954 0.2650 0.010 2df8:B
8 4ivn:A 264 100 0.1436 0.1023 0.2700 0.073 4ivn:B
9 4amv:A 608 91 0.1596 0.0493 0.3297 0.66 4amv:B, 4amv:C, 7dnr:A, 2j6h:A, 2j6h:B, 1jxa:A, 1jxa:B, 1moq:A, 1mor:A, 1mos:A, 3ooj:A, 3ooj:B, 3ooj:C, 3ooj:D, 3ooj:E, 3ooj:F, 3ooj:G, 3ooj:H, 2vf5:X, 1xff:A, 1xff:B, 1xfg:A, 1xfg:B
10 7ntg:A 402 74 0.1330 0.0622 0.3378 0.74
11 4hn1:C 201 53 0.0904 0.0846 0.3208 0.97 4hmz:A, 4hmz:B, 4hmz:C, 4hmz:D, 4hn1:A, 4hn1:B, 4hn1:D
12 4s2r:P 615 78 0.1223 0.0374 0.2949 1.5 4s2r:Q, 4s2t:P, 4s2t:Q
13 4mvf:A 408 49 0.0745 0.0343 0.2857 2.7 3pm8:A, 3pm8:B
14 2puw:B 331 86 0.1277 0.0725 0.2791 4.0
15 2poc:B 352 86 0.1277 0.0682 0.2791 4.3 2poc:A, 2poc:C, 2poc:D, 2put:A, 2put:B, 2put:C, 2put:D, 2puv:A, 2puv:B, 2puv:C, 2puv:D, 2puw:A
16 3oig:A 260 81 0.1170 0.0846 0.2716 4.6 3oif:A, 3oif:D
17 8xvj:R 397 80 0.1223 0.0579 0.2875 5.7 8xvk:R, 8xvl:R
18 2bbv:C 321 89 0.1223 0.0717 0.2584 6.0 2bbv:A, 2bbv:B
19 3cvj:A 243 141 0.1702 0.1317 0.2270 7.4 3cvj:B, 3cvj:C, 3cvj:D
20 8czq:A 655 39 0.0691 0.0198 0.3333 9.8
21 6cq2:A 688 39 0.0691 0.0189 0.3333 9.8 6cqi:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218