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BioLiP
>protein
MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKKGDALQLVGFGTFKVNHRAERTPQTGKEIKIAAANVPAFVSGK
ALKDAVK

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6o8q:B 91 90 0.9770 0.9341 0.9444 2.41e-54 6o8q:G, 6o8q:H, 6o8q:F, 4yf0:B, 4yfh:B
2 6oaj:B 79 87 0.8736 0.9620 0.8736 1.85e-46 6o6k:A, 6o8q:A, 6o8q:I, 6oaj:C, 4yey:C, 4yf0:A, 4yfh:A
3 4yew:C 71 87 0.7931 0.9718 0.7931 1.21e-40 6o6k:B, 6oaj:D, 4yex:C, 4yft:C
4 4qju:A 90 90 0.5747 0.5556 0.5556 5.74e-29 4qju:B
5 1p71:A 94 89 0.4368 0.4043 0.4270 1.73e-19 1p51:A, 1p51:B, 1p51:D, 1p51:C, 1p71:B, 1p78:A, 1p78:B
6 8flj:F 94 90 0.3333 0.3085 0.3222 1.59e-14 8flj:H
7 4dky:B 101 89 0.3908 0.3366 0.3820 3.42e-14
8 1ihf:B 94 88 0.3103 0.2872 0.3068 7.05e-12 2ht0:B, 5j0n:J, 5j0n:L, 1ouz:B, 1owf:B, 1owg:B, 5wfe:L
9 2iie:A 204 90 0.3563 0.1520 0.3444 1.41e-10 2ht0:A, 1ihf:A, 2iif:A, 5j0n:I, 5j0n:K, 1ouz:A, 1owf:A, 1owg:A, 5wfe:K
10 2iie:A 204 59 0.2414 0.1029 0.3559 1.76e-07 2ht0:A, 1ihf:A, 2iif:A, 5j0n:I, 5j0n:K, 1ouz:A, 1owf:A, 1owg:A, 5wfe:K
11 8flj:G 98 90 0.3333 0.2959 0.3222 1.97e-09 8flj:E
12 2np2:A 102 93 0.2989 0.2549 0.2796 5.48e-07 2np2:B
13 7d58:A 1387 46 0.1494 0.0094 0.2826 1.9 7a6h:A, 7ae1:A, 7ae3:A, 7aea:A, 7fji:A, 7fjj:A, 8ity:A, 8iue:A, 8iuh:A
14 8dqn:C 388 39 0.1494 0.0335 0.3333 6.1 8dqn:A, 8dqn:B, 8dqn:D, 8dqn:E, 8dqn:F, 8dqn:G, 8dqn:H
15 7pvx:A 60 31 0.1609 0.2333 0.4516 8.9 7pvx:C
16 1exf:A 241 28 0.1494 0.0539 0.4643 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417