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BioLiP
>protein
MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARKGRNPQTGKEIDIPASKVPAFK
AGKALKDAVK

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4qju:A 90 90 1.0000 1.0000 1.0000 2.94e-60 4qju:B
2 6o8q:B 91 90 0.5889 0.5824 0.5889 2.63e-33 6o8q:G, 6o8q:H, 6o8q:F, 4yf0:B, 4yfh:B
3 1p71:A 94 89 0.5111 0.4894 0.5169 6.22e-30 1p51:A, 1p51:B, 1p51:D, 1p51:C, 1p71:B, 1p78:A, 1p78:B
4 6oaj:B 79 90 0.4778 0.5443 0.4778 9.19e-22 6o6k:A, 6o8q:A, 6o8q:I, 6oaj:C, 4yey:C, 4yf0:A, 4yfh:A
5 8flj:G 98 90 0.4111 0.3776 0.4111 4.66e-20 8flj:E
6 1ihf:B 94 88 0.3889 0.3723 0.3977 5.39e-20 2ht0:B, 5j0n:J, 5j0n:L, 1ouz:B, 1owf:B, 1owg:B, 5wfe:L
7 8flj:F 94 90 0.3889 0.3723 0.3889 9.01e-19 8flj:H
8 4yew:C 71 90 0.4333 0.5493 0.4333 3.55e-18 6o6k:B, 6oaj:D, 4yex:C, 4yft:C
9 2iie:A 204 90 0.3889 0.1716 0.3889 3.78e-18 2ht0:A, 1ihf:A, 2iif:A, 5j0n:I, 5j0n:K, 1ouz:A, 1owf:A, 1owg:A, 5wfe:K
10 2iie:A 204 49 0.2556 0.1127 0.4694 1.39e-11 2ht0:A, 1ihf:A, 2iif:A, 5j0n:I, 5j0n:K, 1ouz:A, 1owf:A, 1owg:A, 5wfe:K
11 4dky:B 101 89 0.3889 0.3465 0.3933 1.94e-13
12 2np2:A 102 95 0.3556 0.3137 0.3368 3.61e-13 2np2:B
13 6lmj:A 99 99 0.3333 0.3030 0.3030 1.15e-04 6lmj:B
14 6twm:D 328 35 0.1556 0.0427 0.4000 2.2 6twm:A, 6twm:B, 6twm:C, 6twm:E, 6twm:F, 6twm:G, 6twm:I, 6twm:J, 6twm:K
15 8opr:A 651 45 0.1333 0.0184 0.2667 3.5
16 7k64:H 348 49 0.1778 0.0460 0.3265 5.2 7jyb:B, 7jyb:D, 7jyb:G, 7k14:H, 7k64:D, 7k64:G
17 3b9o:A 433 25 0.1111 0.0231 0.4000 5.3 3b9o:B
18 7jw9:A 378 49 0.1778 0.0423 0.3265 6.6 7jw9:B, 7jw9:C, 7jw9:D, 7jyb:A, 7jyb:C, 7jyb:E, 7k14:A, 7k14:B, 7k14:C, 7k14:D, 7k14:E, 7k14:G, 7k64:A, 7k64:C, 7k64:E
19 6cgv:M 303 64 0.2000 0.0594 0.2812 8.3
20 6lt4:A 623 31 0.1333 0.0193 0.3871 9.7 6lt4:B, 6lt4:C, 6lt4:D, 6lt4:E, 6lt4:F, 6lt4:G, 6lt4:H, 6lt4:I, 6lt4:J, 6lt4:K, 6lt4:L, 6lt4:M, 6lt4:N

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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