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BioLiP
>protein
MNKGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREGRNPKTNEKMEIPATRVPAFS
AGKLFREKVAPP

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1p71:A 94 92 1.0000 0.9787 1.0000 9.02e-62 1p51:A, 1p51:B, 1p51:D, 1p51:C, 1p71:B, 1p78:A, 1p78:B
2 4qju:A 90 89 0.5000 0.5111 0.5169 6.01e-30 4qju:B
3 6o8q:B 91 89 0.4565 0.4615 0.4719 1.20e-24 6o8q:G, 6o8q:H, 6o8q:F, 4yf0:B, 4yfh:B
4 4dky:B 101 90 0.4348 0.3960 0.4444 3.69e-18
5 6oaj:B 79 89 0.3913 0.4557 0.4045 1.31e-15 6o6k:A, 6o8q:A, 6o8q:I, 6oaj:C, 4yey:C, 4yf0:A, 4yfh:A
6 8flj:F 94 90 0.3478 0.3404 0.3556 2.13e-15 8flj:H
7 8flj:G 98 89 0.3261 0.3061 0.3371 2.63e-14 8flj:E
8 1ihf:B 94 89 0.3261 0.3191 0.3371 3.89e-14 2ht0:B, 5j0n:J, 5j0n:L, 1ouz:B, 1owf:B, 1owg:B, 5wfe:L
9 4yew:C 71 89 0.3696 0.4789 0.3820 6.56e-14 6o6k:B, 6oaj:D, 4yex:C, 4yft:C
10 2iie:A 204 89 0.3370 0.1520 0.3483 1.38e-13 2ht0:A, 1ihf:A, 2iif:A, 5j0n:I, 5j0n:K, 1ouz:A, 1owf:A, 1owg:A, 5wfe:K
11 2iie:A 204 60 0.2609 0.1176 0.4000 5.19e-10 2ht0:A, 1ihf:A, 2iif:A, 5j0n:I, 5j0n:K, 1ouz:A, 1owf:A, 1owg:A, 5wfe:K
12 2np2:A 102 93 0.3152 0.2843 0.3118 1.63e-08 2np2:B
13 6lmj:A 99 76 0.2174 0.2020 0.2632 0.018 6lmj:B
14 6btx:A 377 49 0.2065 0.0504 0.3878 1.1
15 5ayo:A 406 49 0.2065 0.0468 0.3878 1.1 5aym:A
16 3bqr:A 275 29 0.1304 0.0436 0.4138 3.8 5a6n:A, 3bhy:A, 2j90:A, 2j90:B, 5vja:A, 5vja:B, 5vja:C, 5vja:D
17 6fhb:A 302 44 0.1630 0.0497 0.3409 5.9 6aar:A, 5aut:A, 5auu:A, 5auv:A, 5auw:A, 5aux:A, 5auy:A, 5auz:A, 5av0:A, 5av2:A, 5av3:A, 5av4:A, 7ccu:A, 7ccv:A, 7ccw:A, 3dfc:B, 3eh9:A, 3eha:A, 3f5g:A, 3f5u:A, 3gu4:A, 3gu5:A, 3gu6:A, 3gu7:A, 3gu8:A, 3gub:A, 8ie5:A, 8ie6:A, 8ie7:A, 8ie8:A, 1ig1:A, 1jkk:A, 1jkl:A, 1p4f:A, 4pf4:A, 4tl0:A, 4txc:A, 2w4j:A, 2w4k:A, 1wvx:A, 1wvy:A, 2xuu:A, 2xzs:A, 2xzs:B, 2yak:A, 4yo4:A, 4ypd:A, 3zxt:B, 3zxt:C
18 3zxt:A 249 44 0.1630 0.0602 0.3409 6.7 3zxt:D
19 7odx:A 350 22 0.1196 0.0314 0.5000 8.0
20 5a52:A 154 42 0.1196 0.0714 0.2619 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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