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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNKDQAEKYQERSLRQKYNLLHVLPTLNSRALSGLYYKNFHNSVKRYQIMLPEQLKSGKFCSHCGCVYVPNGDSDELGGE
SMEGPKKCIQVNCLNCEKSKLFEW

The query sequence (length=104) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7c79:K 104 104 1.0000 1.0000 1.0000 2.92e-75 7c7a:K
2 6w6v:K 79 73 0.6635 0.8734 0.9452 1.72e-47
3 5msy:A 457 36 0.1346 0.0306 0.3889 0.94 5msy:B, 5msy:C
4 1qft:A 175 34 0.1250 0.0743 0.3824 1.1 3g7x:A, 3g7x:B, 1qft:B, 1qfv:A, 1qfv:B
5 6dec:I 209 29 0.0962 0.0478 0.3448 1.4
6 6yw7:B 286 35 0.1058 0.0385 0.3143 2.1 2p9i:B, 2p9k:B, 6yw6:B
7 2x41:A 715 51 0.1442 0.0210 0.2941 3.3 2x42:A
8 8ab7:P 186 32 0.1154 0.0645 0.3750 3.7 8ab7:E, 8ab8:P, 8ab9:P, 8aba:P, 8abb:P, 8abe:P, 8abf:P, 8abg:P, 8abh:P, 8abi:P, 8abj:P, 8abk:P, 8abm:P, 8ac3:P, 8ac4:P, 8ac5:P
9 3c0t:A 201 32 0.1154 0.0597 0.3750 3.7
10 5hmq:D 624 36 0.1058 0.0176 0.3056 5.3 5hmq:A, 5hmq:B, 5hmq:C, 5hmq:E, 5hmq:F
11 7rja:C 181 28 0.1154 0.0663 0.4286 5.4 7rja:M, 7rjb:E, 7rjc:E, 7rjd:E, 7rje:C, 7rje:M
12 8bpx:AD 196 21 0.0865 0.0459 0.4286 8.0 8bel:D, 8bel:N, 8bpx:BD, 8bq5:AD, 8bq5:BD, 8bq6:AD, 8bq6:BD
13 8p94:B 394 29 0.0962 0.0254 0.3448 9.5 6dec:B, 3dxk:B, 4jd2:B, 7jpn:B, 2p9n:B, 2p9p:B, 2p9s:B, 2p9u:B, 7t5q:B, 8tah:B, 7tpt:B, 1tyq:B, 1u2v:B, 6uhc:B, 3ukr:B, 3ule:B
14 8q1b:E 182 32 0.1154 0.0659 0.3750 9.9 8q1b:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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