Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVS

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4wwc:A 213 75 1.0000 0.3521 1.0000 2.82e-50
2 4u0v:A 243 75 1.0000 0.3086 1.0000 7.51e-50 4u0v:B, 4u0w:A, 4u0w:B, 4u0y:A, 4u0y:B, 4u0y:C, 4u0y:D, 4wwc:B
3 5d4s:B 83 67 0.4000 0.3614 0.4478 4.44e-19 5d4r:A, 5d4r:B, 5d4s:A, 4egy:A, 4egy:B, 4egz:A, 4egz:B, 4h0e:A, 4h0e:B
4 7zla:B 458 72 0.3200 0.0524 0.3333 6.12e-08 7pq9:AAA, 7pq9:BBB, 7pq9:CCC, 7pq9:DDD, 7pq9:EEE, 7pq9:FFF, 7pq9:GGG, 7pq9:HHH, 7pq9:III, 7pq9:JJJ, 7zpa:A, 7zpa:B
5 7zn5:B 435 67 0.3067 0.0529 0.3433 5.27e-07 7zn5:A
6 3by6:C 120 66 0.2800 0.1750 0.3182 1.67e-06 3by6:A
7 6za0:A 240 57 0.3733 0.1167 0.4912 2.19e-06 6z74:A, 6z74:B, 6z74:C, 6z74:D, 6za0:B, 6za3:A, 6za3:B, 6za7:A, 6za7:B, 6za7:C, 6za7:D, 6zab:A
8 4p9u:E 272 53 0.2800 0.0772 0.3962 9.69e-06 4p9u:F, 4p9u:A, 4p9u:B, 4pdk:A, 4pdk:B
9 5dv5:A 267 53 0.2800 0.0787 0.3962 1.01e-05 5dv5:B
10 7u5q:A 217 61 0.3200 0.1106 0.3934 1.40e-05 7u5q:B
11 1h9t:A 232 59 0.2800 0.0905 0.3559 3.08e-05 1h9g:A, 1h9t:B, 1hw2:A, 1hw2:B
12 2di3:A 231 57 0.2533 0.0823 0.3333 6.34e-05 2di3:B
13 6wfq:C 228 50 0.2533 0.0833 0.3800 4.98e-04 6on4:A, 6on4:B, 6wfq:D, 6wg7:C, 6wg7:D, 6wg7:E, 6wg7:G, 6wg7:F, 6wg7:H
14 7xp0:A 200 61 0.2667 0.1000 0.3279 0.042 7xp1:A
15 3wgi:A 217 49 0.2000 0.0691 0.3061 0.18 3wgg:A, 3wgg:B, 3wgh:A, 3wgh:B, 3wgi:B, 3wgi:C, 3wgi:D
16 7wtp:CC 661 60 0.2267 0.0257 0.2833 0.31 6eml:t, 6wdr:k, 7wtq:CC
17 8cbj:k 670 60 0.2267 0.0254 0.2833 0.34 6fai:k, 6y7c:t
18 5ci5:A 393 29 0.1733 0.0331 0.4483 0.37 5ci5:B
19 8c00:t 619 60 0.2267 0.0275 0.2833 0.40 8c01:t, 6rbd:k, 7wtr:CC
20 7jil:s 81 27 0.1733 0.1605 0.4815 0.82
21 8jpx:B 770 45 0.1733 0.0169 0.2889 1.1 8jpx:A
22 8wd8:A 750 47 0.1867 0.0187 0.2979 1.5 8jsi:A, 8jsi:B, 8wd8:B
23 4i2o:A 198 34 0.1867 0.0707 0.4118 2.4 4i2o:B
24 7dk8:A 558 23 0.1600 0.0215 0.5217 3.1
25 2fbh:A 137 33 0.1600 0.0876 0.3636 3.2
26 5lq4:B 465 45 0.2267 0.0366 0.3778 3.7 5lq4:A, 8pz5:A, 8pz5:B
27 5mlt:A 454 32 0.1467 0.0242 0.3438 4.8 5swa:A, 5swa:B, 5swb:A, 5swb:C, 5swb:D, 5swb:G
28 2dc3:A 172 37 0.1200 0.0523 0.2432 5.2 3ag0:A, 4b3w:A, 4b3w:B, 2dc3:B, 1umo:A, 1umo:B, 1urv:A, 1urv:B, 1ury:A, 1ury:B, 1ut0:A, 1ut0:B, 1ux9:A, 1ux9:B, 1v5h:A
29 8tac:B 66 16 0.1200 0.1364 0.5625 6.1
30 7bjq:B 445 39 0.1733 0.0292 0.3333 8.7 7bhi:A, 7bhi:B, 7bih:A, 7bih:B, 7bjq:A, 7bmf:A, 7bmf:B
31 5xyi:Q 133 52 0.2533 0.1429 0.3654 8.9
32 4fnm:A 569 44 0.2000 0.0264 0.3409 9.0 5ch5:A, 5ivi:A, 5ivk:A, 4qwm:A, 5tyj:A, 5tyk:A, 5tyl:A, 5tym:A, 5tyn:A, 5tyo:A, 5typ:A, 4ubi:A, 4ubj:A, 4ubk:A, 4ubl:A, 4ubm:A, 4ubn:A, 4ubo:A, 4w1p:A, 4w1q:A, 4w1r:A, 4w1s:A
33 6wg3:D 932 31 0.1200 0.0097 0.2903 10.0 5qsn:B, 5qsq:B, 5qsr:B, 5qsy:B, 6rrk:A, 6rrk:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417