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BioLiP
>protein
MNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ

The query sequence (length=50) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6n3a:A 50 50 1.0000 1.0000 1.0000 5.83e-28 6n3a:F, 6n3a:B, 6n3a:E, 6n3a:C, 6n3a:D, 6n3a:J, 6n3a:I, 6n3a:G, 6n3a:H
2 5c2k:A 382 25 0.2400 0.0314 0.4800 1.7 5a0f:A, 1a2b:A, 6bc0:F, 6bca:F, 6bca:C, 6bcb:F, 5bwm:A, 5c4m:A, 1cc0:A, 1cc0:C, 1cxz:A, 4d0n:A, 1dpf:A, 5ez6:B, 4f38:A, 8fc7:E, 8fc7:F, 8fc7:G, 8fc7:H, 8fc9:E, 8fc9:F, 8fc9:G, 8fc9:H, 8fcb:E, 8fcb:F, 8fcb:G, 8fcb:H, 8fpw:A, 8fpx:A, 5fr1:A, 5fr2:A, 1ftn:A, 7g80:A, 7g81:A, 7g82:A, 7g83:A, 7g84:A, 7g85:A, 7g86:A, 7g87:A, 7g88:A, 7g89:A, 7g8a:A, 7g8b:A, 7g8c:A, 7g8d:A, 7g8e:A, 7g8f:A, 7g8g:A, 7g8h:A, 7g8i:A, 7g8j:A, 7g8k:A, 7g8l:A, 7g8m:A, 7g8n:A, 7g8o:A, 7g8p:A, 7g8q:A, 7g8r:A, 7g8s:A, 7g8u:A, 7g8v:A, 7g8w:A, 7g8x:A, 7g8y:A, 7g90:A, 7g92:A, 7g93:A, 7g94:A, 7g95:A, 7g96:A, 7g97:A, 7g99:A, 7g9i:A, 7g9j:A, 2gcn:A, 2gco:A, 2gco:B, 2gcp:A, 8gi3:A, 8gi6:A, 5hpy:B, 5hpy:F, 5irc:F, 5irc:D, 5jhh:B, 5jhh:F, 1kmq:A, 6kx2:A, 6kx3:A, 3kz1:E, 3kz1:F, 3lw8:A, 3lw8:B, 3lw8:C, 3lw8:D, 3lwn:A, 3lwn:B, 3lxr:A, 5m6x:B, 5m6x:I, 5m70:B, 5m70:G, 3msx:A, 1ow3:B, 7qsc:B, 7qsc:D, 7qtm:B, 7qtm:I, 6r3v:B, 1s1c:A, 1s1c:B, 8t1c:E, 3tvd:A, 3tvd:B, 1tx4:B, 7u2p:B, 6v6m:A, 6v6u:A, 6v6v:A, 7wza:A, 7wzc:A, 4xoi:A, 4xoi:C, 7xqv:A, 4xsg:A, 4xsh:A, 1z2c:A, 1z2c:C
3 5a0u:H 795 24 0.2000 0.0126 0.4167 3.3 5a0u:A, 5a0u:B, 5a0u:C, 5a0u:D, 5a0u:E, 5a0u:F, 5a0u:G, 9f3w:A, 9f3w:B, 9f3w:C, 9f3w:D, 9f3w:E, 9f3w:F, 9f3w:G, 9f3w:H, 9f3x:A, 9f3x:B, 9f3x:C, 9f3x:D, 9f3x:E, 9f3x:F, 9f3x:G, 9f3x:H, 9f3y:A, 9f3y:B, 9f3y:C, 9f3y:D, 9f3y:E, 9f3y:F, 9f3y:G, 9f3y:H
4 7a19:A 339 45 0.2600 0.0383 0.2889 3.5 7a19:B, 7a1a:A, 7a1a:B, 7wjr:A, 7wjr:B, 7wjr:C, 7wjr:D, 7wkl:A, 7wkl:B, 7wkl:C, 7wkl:D, 7wkm:A, 7wkm:B, 7wmb:A, 7wmb:B
5 8ps2:G 2036 22 0.2200 0.0054 0.5000 8.4 3hmj:G, 3hmj:H, 3hmj:I, 8prv:G, 8prw:G, 8prw:J, 8prw:I, 8prw:H, 8prw:K, 8prw:L, 8ps1:G, 8ps9:G, 8psa:G, 8psf:G, 8psg:G, 8psj:G, 8psk:G, 8psl:G, 8psm:G, 8psp:G, 6ql5:I, 6ql5:G, 6ql5:H, 6ql5:L, 6ql5:J, 6ql5:K, 6ql6:G, 6ql6:H, 6ql6:I, 6ql6:J, 6ql6:K, 6ql6:L, 6ql9:G, 6ql9:H, 6ql9:I, 6ql9:J, 6ql9:K, 6ql9:L, 6ta1:G, 6ta1:C, 6ta1:E, 6ta1:L, 6ta1:H, 6ta1:J, 6u5t:G, 6u5u:G, 2uv8:G, 2uv8:H, 2uv8:I, 2vkz:G, 2vkz:H, 2vkz:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417