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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MMTLENVLEAARHLHQTLPALSEFGNWPTDLTATGLQPRAIPATPLVQALDQPGSPRTTGLVQAIRSAAHLAHWKRTYTE
AEVGADFRNRYGYFELFGPTGHFHSTQLRGYVAYWGAGLDYDWHSHQAEELYLTLAGGAVFKVDGERAFVGAEGTRLHAS
WQSHAMSTGDQPILTFVLWRGEGLNALPRMD

The query sequence (length=191) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4la2:B 192 190 0.9948 0.9896 1.0000 1.21e-140 5jso:A, 5jso:B, 5jsp:A, 5jsp:B, 5jsr:A, 5jsr:B, 4la2:A, 4la3:A, 4la3:B
2 4b29:A 195 188 0.4398 0.4308 0.4468 3.78e-46
3 5cu1:A 197 180 0.3351 0.3249 0.3556 4.21e-29
4 3cew:A 118 60 0.1047 0.1695 0.3333 1.9 3cew:B, 3cew:C, 3cew:D
5 8ch4:D 183 56 0.0838 0.0874 0.2857 4.3 8ch4:A, 8ch4:B, 8ch4:C
6 7yoj:A 867 38 0.0785 0.0173 0.3947 7.1
7 8any:A4 595 58 0.0785 0.0252 0.2586 8.4 8oir:Ae, 8ois:Ae, 7po2:4, 7qi4:A4, 7qi5:A4, 7qi6:A4, 6zm5:A4, 6zm6:A4
8 1j3p:A 187 91 0.1257 0.1283 0.2637 8.5 1j3q:A, 1j3q:B, 1j3r:A, 1j3r:B
9 6qx9:1K 201 74 0.1152 0.1095 0.2973 8.8 7b0y:b, 4pjo:K, 4pjo:k, 4pjo:N, 4pjo:n, 8r08:1K, 7vpx:O
10 7ajt:UR 482 35 0.0785 0.0311 0.4286 9.1 7aju:UR, 7d4i:B8, 7d5s:B8, 7d5t:B8, 7d63:B8, 6ke6:B8, 6lqp:B8, 6lqq:B8, 6lqr:B8, 6lqs:B8, 6lqt:B8, 6lqu:B8, 6lqv:B8, 6nd4:S, 7suk:LS, 5wlc:LS, 6zqa:UR, 6zqb:UR, 6zqc:UR, 6zqd:UR
11 4oev:A 494 32 0.0524 0.0202 0.3125 9.3 4oeu:A, 4oeu:B, 4oev:B
12 1o4t:A 115 56 0.0838 0.1391 0.2857 9.9 1o4t:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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