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BioLiP
>protein
MMRIGELGKKADCLVQTVRFYESEGLLPEPFRLYDEVHLQRLLFIRRCRAKDMTLDEIRQLLNLRDRPELGCGEVNALVD
AHIAQVRTKMKELRALERELMDLRRSCDSARTSRECGILNSLA

The query sequence (length=123) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5gpe:D 129 129 1.0000 0.9535 0.9535 6.88e-84 5gpe:A, 5gpe:B, 5gpe:C, 5gpe:E, 5gpe:F, 5gpe:G, 5gpe:H
2 6jni:A 145 127 0.5447 0.4621 0.5276 2.07e-41 6jgw:B, 6jgw:A, 6jgx:A, 6jgx:B, 6jni:B, 6jni:H, 6jni:C, 6jni:D, 6jni:E, 6jni:F, 6jni:G, 6jyw:A, 6jyw:B
3 4ua1:B 125 125 0.3740 0.3680 0.3680 8.43e-19 4ua1:A
4 5crl:B 119 121 0.3333 0.3445 0.3388 4.55e-14
5 4wlw:A 130 128 0.2764 0.2615 0.2656 5.14e-12 7c17:G, 7c17:H, 6ldi:G, 6ldi:H, 1q05:A, 1q05:B, 4wls:A, 4wls:B, 6xh7:G, 6xh7:H, 6xh8:G, 6xh8:H
6 1q08:A 94 86 0.2602 0.3404 0.3721 6.73e-10 1q08:B, 1q09:A, 1q0a:A, 1q0a:B
7 3d6y:A 277 104 0.2114 0.0939 0.2500 0.44 1bow:A, 7ckq:G, 7ckq:I, 3d6z:A, 3d70:A, 3d71:A, 1exi:A, 1exj:A, 3q1m:A, 3q2y:A, 3q3d:A, 3q5p:A, 3q5r:A, 3q5s:A, 1r8e:A
8 3gp4:A 132 69 0.1463 0.1364 0.2609 0.79 3gp4:B
9 4uvq:A 263 41 0.1220 0.0570 0.3659 1.1
10 5e2f:A 237 78 0.1789 0.0928 0.2821 1.1
11 7tea:B 78 61 0.1545 0.2436 0.3115 1.2 7tea:E, 7tea:A, 7tea:C
12 2zhg:A 121 27 0.0813 0.0826 0.3704 1.5 2zhh:A
13 8fth:A 1263 60 0.1545 0.0150 0.3167 1.7
14 7ajt:CM 360 24 0.1057 0.0361 0.5417 1.9 7aju:CM, 7d4i:RK, 7d5s:RK, 7d5t:RK, 7d63:RK, 6ke6:RK, 6lqp:RK, 6lqq:RK, 6lqr:RK, 6lqs:RK, 6lqt:RK, 6lqu:RK, 6lqv:RK, 7suk:SH, 5wlc:SH, 6zqa:CM, 6zqb:CM, 6zqc:CM, 6zqd:CM, 6zqe:CM, 6zqg:CM
15 5d8c:B 128 51 0.1301 0.1250 0.3137 2.2 5d8c:A, 5e01:A, 5e01:B
16 2wop:A 554 37 0.1220 0.0271 0.4054 3.1 2wok:A
17 8idp:A 446 16 0.0813 0.0224 0.6250 5.4 8idp:C, 8idp:B, 8idp:D, 8idq:A, 8idq:B, 8idq:C, 8idq:D
18 4mvt:A 255 55 0.1301 0.0627 0.2909 6.3 4mvt:B, 4mvt:C, 4mvt:D
19 7tec:A 72 27 0.0732 0.1250 0.3333 8.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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