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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLVLFETSVGYAIFKVLNEKKLQEVDSLWKEFETPEKANKIVKLKHFEKFQDTAEALAAFTALMEGKINKQLKKVLKKIV
KEAHEPLAVADAKLGGVIKEKLNLSCIHSPVVNELMRGIRSQMDGLIPGVEPREMAAMCLGLAHSLSRYRLKFSADKVDT
MIVQAISLLDDLDKELNNYIMRCREWYGWHFPELGKIISDNLTYCKCLQKVGDRKNYASAKLSELLPEEVEAEVKAAAEI
SMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILG
AEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLED
RGIRKISGTKYEHKSEVKTYDPSGDSTLPT

The query sequence (length=430) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mq8:SB 440 438 1.0000 0.9773 0.9817 0.0 7mq9:SB, 7mqa:SB
2 7aju:CE 436 431 0.5093 0.5023 0.5081 2.09e-152 7ajt:CE, 7d4i:3E, 7d5s:3E, 7d5t:3E, 7d63:3E, 6ke6:3E, 6lqp:3E, 6lqq:3E, 6lqr:3E, 6lqs:3E, 6lqt:3E, 6lqu:3E, 6lqv:3E, 7suk:SB, 5wyj:3E, 5wyk:3E, 6zqa:CE, 6zqb:CE, 6zqc:CE, 6zqd:CE, 6zqe:CE
3 6rxt:CD 420 414 0.4977 0.5095 0.5169 1.57e-141 5oql:U, 6rxu:CD, 6rxv:CD, 6rxx:CD, 6rxy:CD, 6rxz:CD
4 6nd4:b 425 299 0.3953 0.4000 0.5686 1.79e-118 5wlc:SB
5 7mq8:SA 396 411 0.4093 0.4444 0.4282 8.09e-101 7mq9:SA, 7mqa:SA
6 7ajt:CD 380 410 0.3581 0.4053 0.3756 3.46e-82 7aju:CD, 7d4i:3D, 7d5s:3D, 7d5t:3D, 7d63:3D, 6ke6:3D, 6lqp:3D, 6lqq:3D, 6lqr:3D, 6lqs:3D, 6lqt:3D, 6lqu:3D, 6lqv:3D, 6nd4:a, 7suk:SA, 5wlc:SA, 5wyj:3D, 5wyk:3D, 6zqa:CD, 6zqb:CD, 6zqc:CD, 6zqd:CD
7 5oql:T 387 410 0.3465 0.3850 0.3634 6.90e-73 6rxt:CC, 6rxu:CC, 6rxv:CC, 6rxy:CC, 6rxz:CC
8 4by9:F 366 354 0.2674 0.3142 0.3249 8.27e-50 4by9:I, 4by9:C, 4by9:L, 3nmu:A, 3nmu:B, 3nvi:A, 3nvi:C, 3nvk:A, 3nvk:F
9 5gin:A 375 262 0.2419 0.2773 0.3969 1.17e-47 5gin:B, 5gin:K, 5gio:A, 5gio:B, 5gio:K, 5gip:A, 5gip:B, 5gip:K, 5gip:L, 3id5:A, 3id5:E, 5jpq:S, 5jpq:T, 3pla:A, 3pla:B, 3pla:K, 7xpl:A, 7xpl:B
10 5o9z:H 413 237 0.1628 0.1695 0.2954 1.63e-29 6ahd:L, 8h6e:4D, 8h6k:4D, 8h6l:4D, 2ozb:B, 2ozb:E, 8q7n:L, 8qo9:L, 8qoz:L, 8qp8:L, 8qp9:L, 8qpa:L, 8qpb:L, 8qpe:L, 8qpk:L, 6qw6:4C, 6qx9:4C, 8qxd:L, 8qzs:L, 8r08:L, 8r09:L, 8r0b:L, 8rm5:L, 3siu:B, 3siu:E, 3siv:B, 3siv:E, 3siv:H, 3siv:K, 8y6o:L
11 8r0a:L 292 243 0.1535 0.2260 0.2716 3.86e-24 6ah0:L
12 3jcm:I 416 252 0.1512 0.1562 0.2579 2.54e-13 5gan:F, 5gap:F, 5nrl:F, 5zwm:L, 5zwo:L
13 8kd9:C 189 81 0.0558 0.1270 0.2963 1.9 8kd9:E, 8kd9:G, 8kd9:H, 8kd9:D, 8kd9:F, 8kd9:J, 8kd9:I, 8kd9:A
14 4wc2:A 367 146 0.0837 0.0981 0.2466 3.0 1vfg:A, 1vfg:B, 4wc0:A, 4wc0:B, 4wc1:A, 4wc1:B, 4wc3:A, 4wc4:A, 4wc5:A, 4wc6:A, 4wc7:A, 4x0a:A, 4x0b:A
15 2lcq:A 161 61 0.0535 0.1429 0.3770 4.2
16 6b0j:A 452 128 0.0698 0.0664 0.2344 4.6 6b0j:B, 6b0j:C, 6b0k:A, 6b0k:B, 6b0k:C, 6b1v:A, 6b1v:B, 6b1v:C, 6bia:A, 6bia:B, 6bia:C
17 3j3v:S 112 39 0.0326 0.1250 0.3590 9.4 7aqc:S, 7aqd:S, 7as8:W, 7as9:W, 8buu:S, 6ha1:S, 6ha8:S, 6htq:S, 3j3w:S, 3j9w:BV, 5njt:l, 7o5b:r, 7ope:W, 6ppf:S, 6ppk:S, 6pvk:S, 8qcq:S, 7qgu:S, 7qh4:S, 8qpp:r, 7qv1:S, 7qv2:S, 7qv3:S, 8r55:r, 8s1p:S, 8s1u:S, 7s9u:S, 7sae:S, 6tnn:l, 6tpq:l

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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