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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLSGLNHLTLAVSQLAPSVAFYQQLLGMTLHARWDSGAYLSCGDLWLCLSLDPQRRVTPPEESDYTHYAFSISEADFASF
AARLEAAGVAVWKLNRSEGASHYFLDPDGHKLELHVGSLAQRLAACREQPYKGMVFFE

The query sequence (length=138) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5wew:B 141 138 1.0000 0.9787 1.0000 4.04e-101 6c3u:A, 6c3u:B, 6c3u:C, 6c3u:D, 8r37:B, 8r37:A, 5v3d:A, 5v3d:B, 5v91:A, 5v91:B, 5wew:A, 5wew:C, 5wew:D, 5wew:F, 5wew:G, 5wew:H
2 5wew:E 119 137 0.8623 1.0000 0.8686 4.89e-83
3 5vb0:C 143 138 0.7971 0.7692 0.7971 1.62e-78 5vb0:A, 5vb0:B, 5vb0:D, 5vb0:E, 5vb0:F, 5vb0:G, 5vb0:H, 5wep:A, 5wep:B
4 1lqk:A 134 136 0.6449 0.6642 0.6544 7.76e-52 1lqk:B, 1lqo:A, 1lqo:B, 1lqp:A, 1lqp:B, 1nki:A, 1nki:B, 1nnr:A, 1nnr:B
5 7n7g:A 138 133 0.3623 0.3623 0.3759 9.78e-25 7n7g:B
6 8dtd:A 138 143 0.3986 0.3986 0.3846 2.00e-24 8dtd:B, 8e7q:A, 8e7q:B, 8e7r:A, 8e7r:B, 8g7f:A, 8g7f:B, 8g7g:A, 8g7g:B, 8g7h:A, 8g7h:B, 8g7i:A, 8g7i:B, 4jh1:A, 4jh1:B, 4jh2:A, 4jh2:B, 4jh3:A, 4jh3:B, 4jh4:A, 4jh4:B, 4jh5:A, 4jh5:B, 4jh6:A, 4jh6:B, 4jh7:A, 4jh7:B, 4jh8:A, 4jh8:B, 4jh9:A, 4jh9:B
7 4jd1:B 148 140 0.3333 0.3108 0.3286 8.61e-21 5f6q:A, 5f6q:B, 4ir0:A, 4ir0:B, 4jd1:A
8 4naz:A 130 140 0.3478 0.3692 0.3429 4.53e-19 4nay:A, 4nb0:A, 4nb0:B, 4nb1:B, 4nb1:A
9 2p7p:A 131 134 0.3261 0.3435 0.3358 8.07e-15 2p7o:A, 2p7o:B, 2p7p:B, 2p7p:C, 2p7p:D, 2p7p:E, 2p7p:F, 2p7q:A, 2p7q:B, 2p7q:C, 2p7q:D, 2p7q:E, 2p7q:F
10 1r9c:A 125 131 0.2754 0.3040 0.2901 1.49e-11 1r9c:B
11 6a4x:A 127 124 0.2536 0.2756 0.2823 1.29e-09
12 8he6:B 120 124 0.2609 0.3000 0.2903 2.01e-08
13 3l7t:B 133 133 0.2754 0.2857 0.2857 3.56e-05
14 6a4z:A 127 122 0.2319 0.2520 0.2623 3.27e-04 6a4z:B, 7w5e:A, 7w5e:B, 7w5e:C, 7w5e:D, 7wb2:A, 7wb2:B, 7wb2:C, 7wb2:D
15 6a52:B 125 58 0.1304 0.1440 0.3103 0.003 6a52:A
16 2c21:A 139 117 0.2246 0.2230 0.2650 0.027 2c21:B, 2c21:C, 2c21:D, 2c21:E, 2c21:F
17 1kmy:A 288 124 0.2536 0.1215 0.2823 0.044 1han:A, 1knd:A, 1knf:A, 1lgt:A, 1lkd:A
18 3ct8:A 133 123 0.2246 0.2331 0.2520 0.060
19 3bga:A 1003 14 0.0725 0.0100 0.7143 0.17 3bga:B
20 6qh4:C 138 27 0.0942 0.0942 0.4815 0.18 6qh4:A, 6qh4:B, 6qh4:D, 3rmu:A, 3rmu:B, 3rmu:C, 3rmu:D
21 3kol:A 146 134 0.2536 0.2397 0.2612 0.31
22 4mtt:A 128 121 0.2319 0.2500 0.2645 0.60 4mtr:A, 4mtr:B, 4mts:B, 4mtt:B
23 7q4a:B 346 20 0.0942 0.0376 0.6500 0.83 7q4a:A
24 8jze:a 670 101 0.2391 0.0493 0.3267 1.3 8jzf:a
25 3hpv:A 297 118 0.2101 0.0976 0.2458 2.4 3hpv:B, 3hpv:C, 3hpv:D, 3hpy:A, 3hpy:B, 3hpy:C, 3hpy:D, 3hq0:A, 3hq0:B, 3hq0:C, 3hq0:D
26 1fa5:A 128 124 0.2391 0.2578 0.2661 2.6 1fa5:B, 1fa6:A, 1fa6:B
27 3oxh:A 251 33 0.0942 0.0518 0.3939 3.8
28 1f1u:A 322 14 0.0580 0.0248 0.5714 6.8 1f1r:A, 1f1r:B, 1f1u:B, 1f1v:A, 1f1v:B
29 7pog:A 2382 77 0.1522 0.0088 0.2727 9.4 4dmw:A, 3ho6:A, 3ho6:B, 4r04:A, 3srz:A, 3ss1:A, 7u2p:A, 7uby:B, 7uby:A, 5uqk:A, 5uql:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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