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BioLiP
>protein
MLQKKIEEIAAKYKHSVVKKCCYDGASVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANISHKDMC

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5hcc:A 982 69 0.9577 0.0692 0.9855 1.20e-42 7ad6:A, 8ayh:A, 1cfa:A, 5hcd:A, 5hce:A
2 4wb2:C 74 69 0.6056 0.5811 0.6232 4.30e-28 4wb2:A, 4wb3:A, 4wb3:C
3 8cem:B 974 63 0.3380 0.0246 0.3810 1.46e-05
4 1yht:A 344 30 0.1690 0.0349 0.4000 0.77
5 5och:C 537 31 0.1549 0.0205 0.3548 0.83
6 5och:E 576 31 0.1549 0.0191 0.3548 0.83 7ehl:A, 7ehl:B, 5och:A, 5och:B, 5och:D, 5och:F, 5och:G, 5och:H
7 5okl:B 558 21 0.1127 0.0143 0.3810 3.4
8 6rq7:B 479 21 0.1127 0.0167 0.3810 3.6
9 2vyc:A 755 38 0.2113 0.0199 0.3947 4.2 2vyc:B, 2vyc:C, 2vyc:D, 2vyc:E, 2vyc:F, 2vyc:G, 2vyc:H, 2vyc:I, 2vyc:J
10 6hsj:B 390 34 0.1972 0.0359 0.4118 7.0 6hsp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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