Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLPGTFFEVLKNEGVVAIATQGEDGPHLVNVWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPG
TGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL

The query sequence (length=122) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3a20:A 122 121 0.9836 0.9836 0.9917 2.17e-85 3a20:B, 3a6q:A, 3a6q:B, 3a6r:A, 3a6r:B, 3a6r:C, 3a6r:D, 3amf:A, 3amf:B, 3awh:A, 3awh:B, 1axj:A, 2e83:A, 2e83:B, 1flm:A, 1flm:B, 3vy2:A, 3vy2:B, 3vy5:A, 3vy5:B, 3vya:A, 1wli:A, 1wli:B, 1wlk:A, 1wlk:B, 1wlk:C, 1wlk:D
2 7eg5:A 125 125 0.3934 0.3840 0.3840 1.27e-24 7eg5:B
3 3j7a:C 195 77 0.1721 0.1077 0.2727 0.22 3jbn:C, 3jbo:C, 3jbp:C, 6okk:C, 8tpu:SC
4 4r2w:D 251 90 0.1885 0.0916 0.2556 3.3 7q2w:FFF, 4r2w:A, 4r2w:B, 4r2w:C, 4r2w:E, 4r2w:F, 4r2x:C, 4r2x:D, 4r2x:E, 4r2x:F, 4r2x:A, 4r2x:B, 4yjk:D, 4yjk:F, 4yjk:A
5 4neh:A 1084 25 0.0820 0.0092 0.4000 7.1 5es4:A, 3k6s:A, 3k71:G
6 4nen:A 1063 25 0.0820 0.0094 0.4000 7.3
7 3k6s:C 885 25 0.0820 0.0113 0.4000 7.6 5es4:C, 5es4:E, 5es4:G, 3k6s:E, 3k6s:G, 3k71:A, 3k71:C, 3k71:E, 3k72:A, 3k72:C
8 4v6i:AA 252 72 0.1557 0.0754 0.2639 8.3 7a1g:P, 7b7d:P, 8bn3:S0, 8bqd:P, 8bqx:P, 8c01:P, 8cah:P, 8cas:P, 8cbj:A, 8ccs:d, 8cdl:d, 8cdr:d, 8ceh:d, 8cf5:d, 8cg8:d, 8cgn:d, 8civ:d, 8cku:d, 8cmj:d, 5dat:S0, 5dat:s0, 5dc3:S0, 5dc3:s0, 5dge:S0, 5dge:s0, 5dgf:S0, 5dgf:s0, 5dgv:S0, 5dgv:s0, 6eml:P, 8eub:BA, 8evp:BA, 8evq:BA, 8evr:BA, 8evs:BA, 8evt:BA, 8ewb:BA, 8ewc:BA, 6fai:A, 5fci:S0, 5fci:s0, 5fcj:S0, 5fcj:s0, 6fyx:A, 6fyy:A, 6gq1:q, 6gqb:q, 6gqv:q, 6gsm:A, 6gsn:A, 6hhq:B, 6hhq:s0, 5i4l:S0, 5i4l:s0, 6i7o:P, 6i7o:Pb, 8i7j:A, 5it7:A, 5it9:A, 3j6x:S0, 3j6y:S0, 3j77:S0, 3j78:S0, 3j80:A, 3j81:A, 3jam:A, 3jap:A, 5juo:XA, 5jup:XA, 5jus:XA, 5jut:XA, 5juu:XA, 8k2d:SA, 8k82:SA, 5ll6:P, 5lyb:S0, 5lyb:s0, 5m1j:A2, 5mc6:P, 5mei:s0, 5mei:B, 7mpi:BA, 7mpj:BA, 7n8b:BA, 5ndg:S0, 5ndg:s0, 5ndv:S0, 5ndv:s0, 5ndw:S0, 5ndw:s0, 7nrc:SP, 7nrd:SP, 5obm:S0, 5obm:s0, 5on6:s0, 5on6:B, 7osa:uS2, 7osm:uS2, 6q8y:P, 6rbd:A, 6rbe:A, 7rr5:SA, 8rw1:A, 6s47:BB, 8s8d:A, 8s8e:A, 8s8f:A, 8s8g:A, 8s8h:A, 8s8i:A, 8s8j:A, 6snt:A, 6sv4:P, 6sv4:Pb, 6sv4:Pc, 6t4q:SA, 6t7i:SA, 6t7t:SA, 6t83:Ab, 6t83:b, 5tbw:B, 5tbw:s0, 6tb3:P, 5tga:S0, 5tga:s0, 5tgm:S0, 5tgm:s0, 6tnu:P, 4u3m:S0, 4u3m:s0, 4u3n:S0, 4u3n:s0, 4u3u:S0, 4u3u:s0, 4u4n:S0, 4u4n:s0, 4u4o:S0, 4u4o:s0, 4u4q:S0, 4u4q:s0, 4u4r:S0, 4u4r:s0, 4u4u:S0, 4u4u:s0, 4u4y:S0, 4u4y:s0, 4u4z:S0, 4u4z:s0, 4u50:S0, 4u50:s0, 4u51:S0, 4u51:s0, 4u52:S0, 4u52:s0, 4u53:S0, 4u53:s0, 4u55:S0, 4u55:s0, 4u56:S0, 4u56:s0, 4u6f:S0, 4u6f:s0, 4uer:B, 6uz7:A, 4v4b:AB, 4v7h:AB, 4v7r:CA, 4v88:AA, 4v88:CA, 4v8y:AA, 4v8z:AA, 4v92:BA, 6wdr:A, 6woo:AA, 6xiq:q, 6xir:q, 8y0u:SA, 6y7c:A, 6z6j:SA, 6z6k:SA, 6zce:B, 7zpq:AA, 7zrs:AA, 6zu9:P, 7zuw:AA, 7zux:DA, 6zvi:i, 7zw0:sP
9 6h57:A 795 25 0.0902 0.0138 0.4400 8.5
10 7aju:JD 811 25 0.0902 0.0136 0.4400 8.5 6zqd:JD, 6zqe:JD, 6zqf:JD
11 6zqg:JD 829 25 0.0902 0.0133 0.4400 8.5
12 7d63:RZ 839 25 0.0902 0.0131 0.4400 8.5 7d4i:RZ, 7d5t:RZ, 7mqj:A
13 5uow:B 795 45 0.1230 0.0189 0.3333 9.6

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218