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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MLMPKEDRNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYL
NLPEAAAAAAAAAAAA

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5fci:c0 96 96 1.0000 1.0000 1.0000 2.86e-67 5fcj:C0, 5fcj:c0, 5lyb:C0, 5lyb:c0, 5tga:c0
2 8bn3:C0 96 90 0.8854 0.8854 0.9444 3.60e-60 7a1g:C, 7b7d:C, 8bqd:C, 8bqx:C, 8cah:C, 8cas:D, 8ccs:n, 8cdl:n, 8cdr:n, 8cf5:n, 8cku:n, 5dat:C0, 5dat:c0, 5dc3:C0, 5dc3:c0, 5dge:C0, 5dge:c0, 5dgf:C0, 5dgf:c0, 5dgv:C0, 5dgv:c0, 8eub:BK, 8evp:BK, 8evq:BK, 8evr:BK, 8evs:BK, 8evt:BK, 8ewb:BK, 8ewc:BK, 5fci:C0, 6gq1:AA, 6gqb:AA, 6gqv:AA, 6hhq:L, 6hhq:c0, 5i4l:C0, 5i4l:c0, 6i7o:C, 6i7o:Cb, 3j6x:10, 3j6y:10, 3j77:10, 3j78:10, 5juo:HB, 5jup:HB, 5jus:HB, 5jut:HB, 5juu:HB, 8k2d:SK, 8k82:SK, 5m1j:K2, 5mc6:C, 5mei:c0, 5mei:L, 7mpi:BK, 7mpj:BK, 7n8b:BK, 5ndg:C0, 5ndg:c0, 5ndv:C0, 5ndv:c0, 5ndw:C0, 5ndw:c0, 7nrc:SC, 7nrd:SC, 5obm:C0, 5obm:c0, 5on6:c0, 5on6:L, 7osa:eS10, 6q8y:C, 6rbe:K, 7rr5:SK, 6s47:BL, 6snt:K, 6sv4:C, 6sv4:Cb, 6sv4:Cc, 6t4q:SK, 6t7i:SK, 6t7t:SK, 6t83:Kb, 6t83:l, 5tbw:L, 5tbw:c0, 6tb3:C, 5tga:C0, 5tgm:C0, 5tgm:c0, 6tnu:C, 4u3m:C0, 4u3m:c0, 4u3n:C0, 4u3n:c0, 4u3u:C0, 4u3u:c0, 4u4n:C0, 4u4n:c0, 4u4o:C0, 4u4o:c0, 4u4q:C0, 4u4q:c0, 4u4r:C0, 4u4r:c0, 4u4u:C0, 4u4u:c0, 4u4y:C0, 4u4y:c0, 4u4z:C0, 4u4z:c0, 4u50:C0, 4u50:c0, 4u51:C0, 4u51:c0, 4u52:C0, 4u52:c0, 4u53:C0, 4u53:c0, 4u55:C0, 4u55:c0, 4u56:C0, 4u56:c0, 4u6f:C0, 4u6f:c0, 4uer:7, 4v88:AK, 4v88:CK, 4v8y:AK, 4v8z:AK, 4v92:BK, 6wdr:K, 6woo:KK, 6xiq:AA, 6xir:AA, 6z6j:SK, 6z6k:SK, 6zce:L, 7zpq:AK, 7zrs:AK, 6zu9:D, 7zuw:AK, 7zux:DK, 6zvi:s, 7zw0:sC
3 6fyx:K 96 96 0.8021 0.8021 0.8021 1.03e-53 6fyy:K, 6gsm:K, 6gsn:K, 8i7j:K, 5it7:K, 5it9:K, 3j80:K, 3j81:K, 3jam:K, 3jap:K, 8rw1:K, 8s8d:K, 8s8e:K, 8s8f:K, 8s8g:K, 8s8h:K, 8s8i:K, 8s8j:K, 6uz7:K
4 8c3a:M 98 85 0.7604 0.7449 0.8588 4.64e-53 8c3a:CX, 8cgn:n, 8cq7:M, 8cq7:CX, 8cqw:M, 8cqw:CX, 8cre:M, 8cre:CX, 8oeq:M, 8oeq:CX, 7pzy:L, 7q08:L, 7q0f:L, 7q0p:L, 7q0r:L, 8q5i:L
5 7r81:L2 90 90 0.5938 0.6333 0.6333 8.18e-38 7olc:SK, 7old:SK, 8oo0:SK, 7z3n:SK, 7z3o:SK
6 4v7e:BK 96 95 0.5625 0.5625 0.5684 1.37e-36 8ip8:da, 8ip9:da, 8ipa:da, 8ipb:da, 8jiw:BK, 8r57:K
7 9bkd:a 99 93 0.5104 0.4949 0.5269 1.03e-32 7a01:E3, 7a09:u, 5a2q:K, 5aj0:BK, 9bdl:AS10, 9bdn:AS10, 9bdp:AS10, 8bhf:L3, 9bln:a, 8btk:Aj, 7cpu:SK, 7cpv:SK, 4d5l:K, 4d61:K, 6d90:LL, 6d9j:LL, 9f1b:Aj, 9f1c:Aj, 9f1d:Aj, 6fec:t, 5flx:K, 6g51:K, 6g53:K, 6g5h:K, 6g5i:K, 8g5y:SK, 8g5z:SK, 8g60:SK, 8g61:SK, 8g6j:SK, 8glp:SK, 6gz3:BK, 6gz4:BK, 6gz5:BK, 6hcf:L1, 6hcj:L2, 6hcm:L1, 6hcq:L2, 8ifd:2u, 8ife:2u, 6ip5:2u, 6ip6:2u, 6ip8:2u, 3j7p:SK, 3j7r:SK, 3jag:KK, 3jah:KK, 3jai:KK, 3jaj:SK, 3jan:SK, 8jdj:7, 8jdk:7, 8jdl:7, 8jdm:7, 7jqb:L, 7jqc:L, 5k0y:t, 8k2c:SK, 7k5i:K, 4kzx:K, 4kzy:K, 4kzz:K, 5lks:SK, 7ls1:v2, 7ls2:v2, 5lzs:KK, 5lzt:KK, 5lzu:KK, 5lzv:KK, 5lzw:KK, 5lzx:KK, 5lzy:KK, 5lzz:KK, 7mdz:KK, 6mtb:KK, 6mtc:KK, 6mtd:KK, 6mte:KK, 7nwg:L2, 7nwh:KK, 7nwi:KK, 7o7y:Aj, 7o7z:Aj, 7o80:Aj, 7o81:Aj, 5oa3:K, 6ole:SK, 6olf:SK, 6olg:BK, 6oli:SK, 6olz:BK, 6om0:SK, 6om7:SK, 7oya:K2, 7oyb:K2, 7oyc:K2, 7oyd:KK, 8oz0:i, 8p03:M, 8p09:M, 8p2k:Aj, 6p4g:L, 6p4h:L, 6p5i:L, 6p5j:L, 6p5k:L, 6p5n:L, 8pj1:a, 8pj2:a, 8pj3:a, 8pj4:a, 8pj5:a, 8pj6:a, 8ppk:K, 8ppl:AK, 8q7z:Aj, 8q87:Aj, 7qgg:SK, 8qoi:SK, 7qp6:a, 7qp7:a, 7qvp:SK, 7qvp:RK, 6qzp:SK, 7r4x:K, 6r5q:SS, 6r6g:SS, 6r6p:SS, 6r7q:SS, 8scb:KK, 6sgc:L1, 7syg:L, 7syh:L, 7syi:L, 7syj:L, 7syk:L, 7syl:L, 7sym:L, 7syn:L, 7syo:L, 7syp:L, 7syq:L, 7syr:L, 7sys:L, 7syt:L, 7syu:L, 7syv:L, 7syw:L, 7syx:L, 5t2c:Av, 8t4s:K, 7toq:AS10, 7tor:AS10, 7tql:M, 7ucj:KK, 7uck:KK, 4ug0:SK, 4ujc:CK, 4ujd:CK, 4uje:BK, 4v6x:AK, 5vyc:K1, 5vyc:K2, 5vyc:K3, 5vyc:K4, 5vyc:K5, 5vyc:K6, 6w2s:L, 6w2t:L, 6xa1:SK, 7xnx:SK, 7xny:SK, 8xsx:SK, 8xsy:SK, 8xsz:SK, 8xxl:SK, 8xxm:SK, 8xxn:SK, 6y0g:SK, 8y0w:SK, 8y0x:SK, 6y2l:SK, 6y57:SK, 6yal:M, 6yam:M, 6yan:M, 6ybs:a, 8yoo:SK, 8yop:SK, 6z6l:SK, 6z6m:SK, 6z6n:SK, 7zjw:SV, 7zjx:SV, 6zlw:M, 6zm7:SK, 6zme:SK, 6zmi:SK, 6zmo:SK, 6zmt:M, 6zmw:a, 6zn5:M, 6zoj:K, 6zol:K, 6zon:u, 6zp4:u, 6zuo:K, 6zv6:K, 6zvh:K, 6zvj:u, 6zvk:E3, 6zxd:K, 6zxe:K, 6zxf:K, 6zxg:K, 6zxh:K
8 7qiy:F 92 90 0.5000 0.5217 0.5333 1.67e-32 8auv:l, 8b2l:l1, 7qiz:PA
9 6xu6:AK 90 84 0.5208 0.5556 0.5952 2.00e-32 6xu7:AK, 6xu8:AK
10 4v6w:AK 95 91 0.4896 0.4947 0.5165 8.64e-30
11 6zj3:SN 92 83 0.4583 0.4783 0.5301 7.32e-29
12 9bh5:AK 93 91 0.4896 0.5054 0.5165 1.04e-26 9cai:AK
13 5xxu:K 94 89 0.4062 0.4149 0.4382 6.34e-26
14 3j7a:O 79 76 0.3229 0.3924 0.4079 6.20e-21 3jbn:O, 3jbo:O, 3jbp:O, 6okk:O, 8tpu:SO
15 5xyi:K 90 89 0.3542 0.3778 0.3820 4.93e-20
16 7ase:N 93 89 0.3229 0.3333 0.3483 1.47e-17 5opt:n
17 4v8m:AD 103 85 0.3333 0.3107 0.3765 3.09e-17 8ova:AD, 8ove:AD
18 8a98:SN 101 89 0.3021 0.2871 0.3258 1.55e-16 8a3w:SN, 6az1:N, 8ovj:SN, 8rxh:SN, 8rxx:SN, 5t2a:AD
19 7qca:SK0 91 85 0.3542 0.3736 0.4000 1.72e-15 8p5d:SK0, 8p60:SK0, 8p60:RK0
20 4v5o:A7 104 73 0.3021 0.2788 0.3973 1.27e-13 4bts:A7, 4bts:B7, 4bts:C7, 4bts:D7, 4v5o:B7
21 8ceh:n 33 65 0.3438 1.0000 0.5077 1.71e-12 8cg8:n, 8civ:n, 8cmj:n, 7osm:eS10
22 6zu5:SK0 74 75 0.2292 0.2973 0.2933 1.34e-08
23 7pwf:K 83 80 0.2708 0.3133 0.3250 1.55e-08
24 8bsj:SL 109 43 0.2083 0.1835 0.4651 4.73e-08 8br8:SL, 8brm:SL, 8bsi:SL, 8btd:SL, 8btr:SL, 8fvy:K, 8g4s:K
25 6rm3:SK0 85 55 0.1875 0.2118 0.3273 9.86e-06
26 7qep:C0 81 51 0.1667 0.1975 0.3137 5.36e-04
27 8e1u:A 1126 22 0.1146 0.0098 0.5000 0.34 8e1u:B, 8e1u:C, 8e1u:D, 8e1u:E, 8e1u:F, 8e1u:G, 8e1u:H
28 1fpw:A 190 85 0.2292 0.1158 0.2588 2.8 2ju0:A
29 5vit:A 548 29 0.1354 0.0237 0.4483 3.1 5vit:P, 5vit:I, 5vit:V
30 2lcp:A 190 43 0.1458 0.0737 0.3256 3.4 5aeq:A, 5aeq:B, 5aer:A, 5afp:B, 5afp:A, 8ahy:B, 8alh:B, 8alm:B, 1g8i:A, 1g8i:B, 4guk:A, 4guk:C, 4guk:B, 4guk:D, 4ov2:A, 4ov2:B, 4ov2:C, 4ov2:D, 6qi4:B, 6qi4:C, 4yru:A, 4yru:B, 4yru:C, 4yru:D
31 5aan:A 183 43 0.1354 0.0710 0.3023 6.7 4by4:A, 4by4:B, 4by5:A, 4by5:B, 4by5:C, 4by5:D, 6epa:A, 5fyx:A, 5g08:A
32 3tze:A 360 33 0.1146 0.0306 0.3333 8.4 3tze:B
33 7mr4:C 1083 16 0.0833 0.0074 0.5000 8.9
34 8b1t:C 1080 16 0.0833 0.0074 0.5000 9.3 8b1u:C, 1w36:F
35 3k70:C 1121 16 0.0833 0.0071 0.5000 9.6 3k70:F, 5ld2:C, 7mr3:C, 6sjb:C, 6sje:C, 6sjf:C, 6sjg:C, 6t2u:C, 6t2v:C, 1w36:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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