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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLIPKEDRKKIYQHLFQEGVLVAKKDFNQPKHEEIDTKNLFVIKALQSLTSKGFVKTQFSWQYYYYTLTEEGVVYLREYL
NLPEHIFPATYLAGQS

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6fyx:K 96 96 1.0000 1.0000 1.0000 3.47e-68 6fyy:K, 6gsm:K, 6gsn:K, 8i7j:K, 5it7:K, 5it9:K, 3j80:K, 3j81:K, 3jam:K, 3jap:K, 8rw1:K, 8s8d:K, 8s8e:K, 8s8f:K, 8s8g:K, 8s8h:K, 8s8i:K, 8s8j:K, 6uz7:K
2 8bn3:C0 96 92 0.8438 0.8438 0.8804 2.70e-57 7a1g:C, 7b7d:C, 8bqd:C, 8bqx:C, 8cah:C, 8cas:D, 8ccs:n, 8cdl:n, 8cdr:n, 8cf5:n, 8cku:n, 5dat:C0, 5dat:c0, 5dc3:C0, 5dc3:c0, 5dge:C0, 5dge:c0, 5dgf:C0, 5dgf:c0, 5dgv:C0, 5dgv:c0, 8eub:BK, 8evp:BK, 8evq:BK, 8evr:BK, 8evs:BK, 8evt:BK, 8ewb:BK, 8ewc:BK, 5fci:C0, 6gq1:AA, 6gqb:AA, 6gqv:AA, 6hhq:L, 6hhq:c0, 5i4l:C0, 5i4l:c0, 6i7o:C, 6i7o:Cb, 3j6x:10, 3j6y:10, 3j77:10, 3j78:10, 5juo:HB, 5jup:HB, 5jus:HB, 5jut:HB, 5juu:HB, 8k2d:SK, 8k82:SK, 5m1j:K2, 5mc6:C, 5mei:c0, 5mei:L, 7mpi:BK, 7mpj:BK, 7n8b:BK, 5ndg:C0, 5ndg:c0, 5ndv:C0, 5ndv:c0, 5ndw:C0, 5ndw:c0, 7nrc:SC, 7nrd:SC, 5obm:C0, 5obm:c0, 5on6:c0, 5on6:L, 7osa:eS10, 6q8y:C, 6rbe:K, 7rr5:SK, 6s47:BL, 6snt:K, 6sv4:C, 6sv4:Cb, 6sv4:Cc, 6t4q:SK, 6t7i:SK, 6t7t:SK, 6t83:Kb, 6t83:l, 5tbw:L, 5tbw:c0, 6tb3:C, 5tga:C0, 5tgm:C0, 5tgm:c0, 6tnu:C, 4u3m:C0, 4u3m:c0, 4u3n:C0, 4u3n:c0, 4u3u:C0, 4u3u:c0, 4u4n:C0, 4u4n:c0, 4u4o:C0, 4u4o:c0, 4u4q:C0, 4u4q:c0, 4u4r:C0, 4u4r:c0, 4u4u:C0, 4u4u:c0, 4u4y:C0, 4u4y:c0, 4u4z:C0, 4u4z:c0, 4u50:C0, 4u50:c0, 4u51:C0, 4u51:c0, 4u52:C0, 4u52:c0, 4u53:C0, 4u53:c0, 4u55:C0, 4u55:c0, 4u56:C0, 4u56:c0, 4u6f:C0, 4u6f:c0, 4uer:7, 4v88:AK, 4v88:CK, 4v8y:AK, 4v8z:AK, 4v92:BK, 6wdr:K, 6woo:KK, 6xiq:AA, 6xir:AA, 6z6j:SK, 6z6k:SK, 6zce:L, 7zpq:AK, 7zrs:AK, 6zu9:D, 7zuw:AK, 7zux:DK, 6zvi:s, 7zw0:sC
3 8c3a:M 98 92 0.7917 0.7755 0.8261 8.97e-53 8c3a:CX, 8cgn:n, 8cq7:M, 8cq7:CX, 8cqw:M, 8cqw:CX, 8cre:M, 8cre:CX, 8oeq:M, 8oeq:CX, 7pzy:L, 7q08:L, 7q0f:L, 7q0p:L, 7q0r:L, 8q5i:L
4 5fci:c0 96 84 0.7812 0.7812 0.8929 1.10e-51 5fcj:C0, 5fcj:c0, 5lyb:C0, 5lyb:c0, 5tga:c0
5 7r81:L2 90 92 0.6042 0.6444 0.6304 4.19e-38 7olc:SK, 7old:SK, 8oo0:SK, 7z3n:SK, 7z3o:SK
6 4v7e:BK 96 90 0.5521 0.5521 0.5889 2.84e-34 8ip8:da, 8ip9:da, 8ipa:da, 8ipb:da, 8jiw:BK, 8r57:K
7 9bkd:a 99 93 0.5521 0.5354 0.5699 5.99e-34 7a01:E3, 7a09:u, 5a2q:K, 5aj0:BK, 9bdl:AS10, 9bdn:AS10, 9bdp:AS10, 8bhf:L3, 9bln:a, 8btk:Aj, 7cpu:SK, 7cpv:SK, 4d5l:K, 4d61:K, 6d90:LL, 6d9j:LL, 9f1b:Aj, 9f1c:Aj, 9f1d:Aj, 6fec:t, 5flx:K, 6g51:K, 6g53:K, 6g5h:K, 6g5i:K, 8g5y:SK, 8g5z:SK, 8g60:SK, 8g61:SK, 8g6j:SK, 8glp:SK, 6gz3:BK, 6gz4:BK, 6gz5:BK, 6hcf:L1, 6hcj:L2, 6hcm:L1, 6hcq:L2, 8ifd:2u, 8ife:2u, 6ip5:2u, 6ip6:2u, 6ip8:2u, 3j7p:SK, 3j7r:SK, 3jag:KK, 3jah:KK, 3jai:KK, 3jaj:SK, 3jan:SK, 8jdj:7, 8jdk:7, 8jdl:7, 8jdm:7, 7jqb:L, 7jqc:L, 5k0y:t, 8k2c:SK, 7k5i:K, 4kzx:K, 4kzy:K, 4kzz:K, 5lks:SK, 7ls1:v2, 7ls2:v2, 5lzs:KK, 5lzt:KK, 5lzu:KK, 5lzv:KK, 5lzw:KK, 5lzx:KK, 5lzy:KK, 5lzz:KK, 7mdz:KK, 6mtb:KK, 6mtc:KK, 6mtd:KK, 6mte:KK, 7nwg:L2, 7nwh:KK, 7nwi:KK, 7o7y:Aj, 7o7z:Aj, 7o80:Aj, 7o81:Aj, 5oa3:K, 6ole:SK, 6olf:SK, 6olg:BK, 6oli:SK, 6olz:BK, 6om0:SK, 6om7:SK, 7oya:K2, 7oyb:K2, 7oyc:K2, 7oyd:KK, 8oz0:i, 8p03:M, 8p09:M, 8p2k:Aj, 6p4g:L, 6p4h:L, 6p5i:L, 6p5j:L, 6p5k:L, 6p5n:L, 8pj1:a, 8pj2:a, 8pj3:a, 8pj4:a, 8pj5:a, 8pj6:a, 8ppk:K, 8ppl:AK, 8q7z:Aj, 8q87:Aj, 7qgg:SK, 8qoi:SK, 7qp6:a, 7qp7:a, 7qvp:SK, 7qvp:RK, 6qzp:SK, 7r4x:K, 6r5q:SS, 6r6g:SS, 6r6p:SS, 6r7q:SS, 8scb:KK, 6sgc:L1, 7syg:L, 7syh:L, 7syi:L, 7syj:L, 7syk:L, 7syl:L, 7sym:L, 7syn:L, 7syo:L, 7syp:L, 7syq:L, 7syr:L, 7sys:L, 7syt:L, 7syu:L, 7syv:L, 7syw:L, 7syx:L, 5t2c:Av, 8t4s:K, 7toq:AS10, 7tor:AS10, 7tql:M, 7ucj:KK, 7uck:KK, 4ug0:SK, 4ujc:CK, 4ujd:CK, 4uje:BK, 4v6x:AK, 5vyc:K1, 5vyc:K2, 5vyc:K3, 5vyc:K4, 5vyc:K5, 5vyc:K6, 6w2s:L, 6w2t:L, 6xa1:SK, 7xnx:SK, 7xny:SK, 8xsx:SK, 8xsy:SK, 8xsz:SK, 8xxl:SK, 8xxm:SK, 8xxn:SK, 6y0g:SK, 8y0w:SK, 8y0x:SK, 6y2l:SK, 6y57:SK, 6yal:M, 6yam:M, 6yan:M, 6ybs:a, 8yoo:SK, 8yop:SK, 6z6l:SK, 6z6m:SK, 6z6n:SK, 7zjw:SV, 7zjx:SV, 6zlw:M, 6zm7:SK, 6zme:SK, 6zmi:SK, 6zmo:SK, 6zmt:M, 6zmw:a, 6zn5:M, 6zoj:K, 6zol:K, 6zon:u, 6zp4:u, 6zuo:K, 6zv6:K, 6zvh:K, 6zvj:u, 6zvk:E3, 6zxd:K, 6zxe:K, 6zxf:K, 6zxg:K, 6zxh:K
8 7qiy:F 92 90 0.5000 0.5217 0.5333 3.04e-31 8auv:l, 8b2l:l1, 7qiz:PA
9 6zj3:SN 92 90 0.5000 0.5217 0.5333 5.25e-31
10 9bh5:AK 93 91 0.5417 0.5591 0.5714 7.34e-31 9cai:AK
11 6xu6:AK 90 90 0.5208 0.5556 0.5556 8.39e-31 6xu7:AK, 6xu8:AK
12 4v6w:AK 95 91 0.5312 0.5368 0.5604 1.85e-30
13 5xxu:K 94 89 0.4583 0.4681 0.4944 3.00e-27
14 3j7a:O 79 76 0.3333 0.4051 0.4211 1.68e-20 3jbn:O, 3jbo:O, 3jbp:O, 6okk:O, 8tpu:SO
15 5xyi:K 90 90 0.3542 0.3778 0.3778 2.17e-18
16 8a98:SN 101 94 0.3438 0.3267 0.3511 5.17e-17 8a3w:SN, 6az1:N, 8ovj:SN, 8rxh:SN, 8rxx:SN, 5t2a:AD
17 4v8m:AD 103 94 0.3542 0.3301 0.3617 6.40e-17 8ova:AD, 8ove:AD
18 7ase:N 93 92 0.3333 0.3441 0.3478 9.50e-16 5opt:n
19 7qca:SK0 91 92 0.3750 0.3956 0.3913 2.41e-15 8p5d:SK0, 8p60:SK0, 8p60:RK0
20 4v5o:A7 104 94 0.3542 0.3269 0.3617 1.07e-14 4bts:A7, 4bts:B7, 4bts:C7, 4bts:D7, 4v5o:B7
21 8bsj:SL 109 99 0.3542 0.3119 0.3434 3.39e-12 8br8:SL, 8brm:SL, 8bsi:SL, 8btd:SL, 8btr:SL, 8fvy:K, 8g4s:K
22 7pwf:K 83 80 0.3125 0.3614 0.3750 5.11e-11
23 8ceh:n 33 22 0.2188 0.6364 0.9545 1.13e-08 8cg8:n, 8civ:n, 8cmj:n, 7osm:eS10
24 6zu5:SK0 74 72 0.2292 0.2973 0.3056 1.99e-07
25 6rm3:SK0 85 76 0.2292 0.2588 0.2895 5.33e-05
26 7qep:C0 81 80 0.2292 0.2716 0.2750 0.016
27 1fpw:A 190 90 0.2396 0.1211 0.2556 0.072 2ju0:A
28 2lcp:A 190 45 0.1458 0.0737 0.3111 0.17 5aeq:A, 5aeq:B, 5aer:A, 5afp:B, 5afp:A, 8ahy:B, 8alh:B, 8alm:B, 1g8i:A, 1g8i:B, 4guk:A, 4guk:C, 4guk:B, 4guk:D, 4ov2:A, 4ov2:B, 4ov2:C, 4ov2:D, 6qi4:B, 6qi4:C, 4yru:A, 4yru:B, 4yru:C, 4yru:D
29 5aan:A 183 45 0.1354 0.0710 0.2889 0.33 4by4:A, 4by4:B, 4by5:A, 4by5:B, 4by5:C, 4by5:D, 6epa:A, 5fyx:A, 5g08:A
30 5g4p:A 184 84 0.2188 0.1141 0.2500 0.75 5g4p:E, 5g58:A, 5g58:E, 5m6c:A, 5m6c:E
31 1bjf:A 181 84 0.2188 0.1160 0.2500 1.3 1bjf:B
32 6rxt:UA 839 82 0.2083 0.0238 0.2439 3.8 5oql:A, 6rxu:UA, 6rxv:UA, 6rxx:UA, 6rxy:UA, 6rxz:UA
33 1omr:A 201 84 0.2396 0.1144 0.2738 5.1 2het:A, 2het:B, 2het:C, 2het:D, 2i94:A, 1jsa:A, 1la3:A, 4m2o:A, 4m2p:A, 4m2q:A, 4mlw:A, 1omv:A, 1rec:A, 4yi8:A, 4yi9:A
34 8cxa:A 251 27 0.1146 0.0438 0.4074 6.0 8cxa:B
35 8ig0:B 490 28 0.1250 0.0245 0.4286 8.0 6b41:A, 5ddb:A, 6e1a:A, 8e90:A, 8e90:B, 4i80:A, 8ig0:A, 8ig0:C, 8ig0:D, 7m4t:A, 7o9x:A, 7o9z:A, 7oa9:A, 6pkc:A, 6pkc:B, 6s2k:B, 3u85:A, 3u86:A, 3u88:A, 3u88:B, 6wnh:A
36 4og4:A 469 28 0.1250 0.0256 0.4286 9.1 6bxh:A, 6bxy:A, 6by8:A, 5db0:A, 5db1:A, 5db2:A, 5db3:A, 5dd9:A, 5dda:A, 5ddc:A, 5ddd:A, 5dde:A, 5ddf:A, 4gq3:A, 4gq4:A, 4gq6:A, 6o5i:A, 4og3:A, 4og5:A, 4og6:A, 4og7:A, 4og8:A, 6opj:A, 7uj4:A, 7uj4:B, 4x5y:A, 4x5z:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417