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BioLiP
>protein
MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVIHYTR

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4ayb:N 65 64 0.9375 0.9231 0.9375 3.68e-42 3hkz:N, 3hkz:W, 2pmz:N, 2pmz:Y, 4v8s:AO, 4v8s:BN, 2waq:N, 2wb1:N, 2wb1:O, 2y0s:N, 2y0s:O
2 7ok0:N 66 64 0.7188 0.6970 0.7188 5.12e-32 7oq4:N
3 8cro:N 65 62 0.6250 0.6154 0.6452 2.29e-29 8oki:N, 8orq:N, 8p2i:N, 8rbo:N
4 9bct:N 65 62 0.6406 0.6308 0.6613 2.34e-29 9bcu:N, 6kf4:N, 4qiw:N, 4qiw:V
5 7b0y:J 67 63 0.5000 0.4776 0.5079 1.35e-23 8a3y:J, 7a6h:J, 7ae1:J, 7ae3:J, 7aea:J, 8b3d:J, 8b3f:J, 8bvw:J, 8byq:J, 8bz1:J, 7d58:J, 7d59:J, 7dn3:J, 6drd:J, 7du2:J, 7edx:x, 7eg7:x, 7eg8:x, 7eg9:x, 7ega:x, 7egb:x, 7egc:x, 7ena:PJ, 7enc:PJ, 6exv:J, 7f4g:J, 7fji:J, 7fjj:J, 5flm:J, 6gmh:J, 6gml:J, 8gxq:PJ, 8gxs:PJ, 8ity:J, 8iue:J, 8iuh:J, 5iy6:J, 5iy8:J, 5iy9:J, 5iya:J, 5iyb:J, 5iyc:J, 5iyd:J, 7lbm:J, 7nvr:J, 7nvs:J, 7nvt:J, 7nvu:J, 7nvy:J, 7nvz:J, 7nw0:J, 6o9l:J, 7ob9:J, 7oba:J, 7obb:J, 8oeu:J, 8oev:J, 8oew:J, 8of0:J, 5oik:J, 7okx:J, 7oky:J, 7ol0:J, 7oo3:J, 7oob:J, 7oop:J, 7opc:J, 7opd:J, 7ozn:J, 7ozn:V, 7ozo:J, 7ozo:V, 7ozp:J, 7ozp:V, 8p4a:J, 8p4b:J, 8p4e:J, 8p4f:J, 7pks:J, 8rbx:J, 8s51:J, 8s52:J, 8s54:J, 8s55:J, 8s5n:J, 6ted:J, 8uha:J, 8uhd:J, 8uhg:J, 8ui0:J, 8uis:J, 7unc:J, 7und:J, 7vba:J, 7vbb:J, 7vbc:J, 8wak:x, 8wal:x, 8wan:x, 8wao:x, 8wap:x, 8waq:x, 8war:x, 8was:x, 8wat:x, 8wau:x, 8wav:x, 8waw:x, 8wax:x, 8way:x, 8waz:x, 8wb0:x, 7ycx:8, 7zwd:J, 7zx7:J, 7zx8:J
6 7aoc:J 68 62 0.5000 0.4706 0.5161 7.78e-23 7aod:J, 7aod:V, 3h0g:J, 3h0g:V
7 7xn7:J 67 63 0.4688 0.4478 0.4762 1.31e-22 6a5l:J, 6a5o:J, 6a5p:J, 6a5r:J, 6a5t:J, 6a5u:J, 8h0v:J, 8h0w:J, 8he5:J, 6inq:J, 6ir9:J, 6j4w:J, 6j4x:J, 6j4y:J, 6j4z:J, 6j50:J, 6j51:J, 8jh2:J, 8jh3:J, 8jh4:J, 7wbv:J, 7wbw:J, 7wbx:J, 5x4z:J, 5x4z:V, 5x50:J, 5x51:J, 5x51:V, 5xog:J, 5xon:J, 7xse:J, 7xsx:J, 7xsz:J, 7xt7:J, 7xtd:J, 7xti:J, 8yfq:J, 8yfr:J
8 8hil:J 64 62 0.4688 0.4688 0.4839 1.91e-21 7eu0:J, 7eu1:J, 8him:J, 8hyj:J, 8xmc:J
9 5vvr:J 70 64 0.4688 0.4286 0.4688 6.46e-21 4a3b:J, 4a3c:J, 4a3d:J, 4a3e:J, 4a3f:J, 4a3g:J, 4a3i:J, 4a3j:J, 4a3k:J, 4a3l:J, 4a3m:J, 4a93:J, 2b63:J, 2b8k:J, 4bbr:J, 4bbs:J, 6blo:J, 6blp:J, 6bm2:J, 6bm4:J, 6bqf:J, 8bws:J, 4bxx:J, 4bxz:J, 4by1:J, 4by7:J, 4c2m:J, 4c2m:Y, 4c3h:J, 4c3i:J, 4c3j:J, 5c3e:J, 5c4a:J, 5c4j:J, 5c4x:J, 8cen:J, 8ceo:J, 6cnb:J, 6cnc:J, 6cnd:J, 6cnf:J, 3cqz:J, 2e2h:J, 2e2i:J, 2e2j:J, 6eu0:J, 6eu1:J, 6eu3:J, 6f40:J, 6f41:J, 6f42:J, 5fj8:J, 5fj9:J, 5fja:J, 3fki:J, 5fmf:J, 5fyw:J, 5fz5:J, 5g5l:J, 3gtg:J, 3gtj:J, 3gtk:J, 3gtl:J, 3gtm:J, 3gto:J, 3gtp:J, 3gtq:J, 6gyk:J, 6gyl:J, 6gym:J, 3h3v:K, 6h67:J, 6h68:J, 6hko:J, 6hls:J, 3hou:J, 3hou:V, 3hov:J, 3how:J, 3hox:J, 3hoy:J, 3hoz:J, 1i3q:J, 3i4m:J, 3i4n:J, 1i50:J, 1i6h:J, 6i84:J, 5ip7:J, 5ip9:J, 3j0k:J, 2ja5:J, 2ja6:J, 2ja7:J, 2ja7:V, 2ja8:J, 9ja1:J, 8jch:J, 3k1f:J, 8k5p:J, 3k7a:J, 1k83:J, 7ked:J, 7kee:J, 7kef:J, 5lmx:J, 3m3y:J, 5m3f:J, 5m3m:J, 3m4o:J, 5m5w:J, 5m5x:J, 5m5y:J, 5m64:J, 7mei:j, 7mei:J, 7mk9:J, 7mka:j, 7ml0:J, 7ml1:J, 7ml2:J, 7ml4:J, 5n5y:J, 5n5z:J, 5n60:J, 5n61:J, 1nik:J, 7nkx:J, 2nvq:J, 2nvt:J, 2nvx:J, 2nvy:J, 2nvz:J, 7o4i:J, 7o4j:J, 6o6c:H, 7o72:J, 7o73:J, 7o75:J, 5oa1:J, 5oqj:J, 5oqm:J, 5ot2:J, 3po2:J, 3po3:J, 3qt1:J, 1r5u:J, 2r7z:J, 1r9s:J, 1r9t:J, 2r92:J, 2r93:J, 7rim:J, 7rip:J, 7riq:J, 7riw:J, 7rix:J, 7riy:J, 6rqt:J, 6ruo:J, 6rwe:J, 3rzd:J, 3rzo:J, 3s14:J, 3s15:J, 3s16:J, 3s17:J, 3s1m:J, 3s1n:J, 3s1q:J, 3s1r:J, 3s2d:J, 3s2h:J, 1sfo:J, 5sva:J, 6tps:J, 6tut:J, 8tug:J, 8tvp:J, 8tvq:J, 8tvs:J, 8tvv:J, 8tvw:J, 8tvx:J, 1twa:J, 1twc:J, 1twf:J, 1twg:J, 1twh:J, 5u5q:J, 8u9r:J, 8u9x:J, 8ukq:J, 8ukr:J, 8uks:J, 8ukt:J, 8uku:J, 6upx:J, 6upy:J, 6upz:J, 6uq0:J, 6uq1:J, 6uq2:J, 6uq3:J, 4v1m:J, 4v1n:J, 4v1o:J, 2vum:J, 5vvs:J, 5w4u:J, 5w51:J, 5w5y:J, 5w64:J, 5w65:J, 5w66:J, 1wcm:J, 4x67:J, 4x6a:J, 1y1v:J, 1y1w:J, 4y52:J, 1y77:J, 4y7n:J, 4ym7:AJ, 4ym7:BJ, 4ym7:CJ, 4ym7:DJ, 4ym7:EJ, 4ym7:FJ, 2yu9:J, 7z0h:J, 7z1l:J, 7z1m:J, 7z1n:J, 7z1o:J, 7z2z:J, 7z30:J, 7z31:J, 7zs9:J, 7zsa:J, 7zsb:J
10 1ef4:A 55 53 0.4531 0.5273 0.5472 3.21e-18
11 3c9u:B 312 29 0.1719 0.0353 0.3793 0.10 3c9r:A, 3c9r:B, 3c9s:A, 3c9s:B, 3c9t:A, 3c9t:B, 3c9u:A
12 8q3b:J 80 75 0.3750 0.3000 0.3200 0.16 8q3k:J
13 3mwf:A 292 41 0.2500 0.0548 0.3902 0.33
14 2ep3:A 46 29 0.1562 0.2174 0.3448 2.5
15 4iv6:B 383 33 0.1875 0.0313 0.3636 2.9 4iv6:A
16 6c25:A 394 21 0.1406 0.0228 0.4286 3.5
17 7bgi:8 217 34 0.1875 0.0553 0.3529 4.7 7blx:8, 7d0j:8, 7dz7:8, 7dz8:8, 8h2u:8, 6ijj:8, 6ijo:8, 6jo5:8, 6jo6:8, 7r3k:8, 7wyi:8, 7wzn:8, 7zq9:8, 7zqc:8, 7zqd:8, 7zqd:82
18 2z38:A 247 24 0.1250 0.0324 0.3333 4.8
19 6dcw:H 223 38 0.1719 0.0493 0.2895 5.5 6gk7:H
20 8auw:A 2900 59 0.2812 0.0062 0.3051 5.6
21 8atu:A 2837 59 0.2812 0.0063 0.3051 5.9 8atu:B, 8atx:A, 8atx:B, 8auk:A, 8auk:B, 8auw:B
22 2jjp:A 397 44 0.1875 0.0302 0.2727 9.2 2jjn:A, 2jjo:A, 2wio:A, 2xfh:A, 3zkp:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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